| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_05040 |
|---|
| Symbol | |
|---|
| ID | 7314483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothermothrix orenii H 168 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011899 |
|---|
| Strand | + |
|---|
| Start bp | 548062 |
|---|
| End bp | 549591 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643610927 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_002508257 |
|---|
| Protein GI | 220931349 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.00959096 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAA ATAAACCAGT AATAGTTACT TTAATGTTTT TAATGTTAGT TACGTTATTA
AGCGGGCAGG TATTTGGTGA GACTCAAATA CCGGTTAGTG TTATTGAGCC CGGGGTTAAA
AGTATCAGGG TTGAGGAATC TGTTACCGGG GTTATAAAAC CCTATCAGGT GGTTAATTTA
TCAACAAAAA CAGGCGGAAT AGTTGATGAG ATTCTGGTTG AGGTTGGTCA AAGGGTTGAA
GCAGGTGAAC CCCTGTTAAA GCTTGAACAG GAAGAATTAA AGGCCCAGGT AAAGCAGGCC
AGAGCTCAAC TTGCCATGGC AAGGGCTTCT TTCAAAAAAA TAAAGGATGG AGCCAGTCCA
GAAGATGTTG AAAAAGTTCG TGGTGCCTAT AACCAGGCCC TTGCTTCATA TAATGGAGCC
AGAAAAGCCT TGAATATAAT AAAAGATATG TATGAGGATA AAACAAGTCA GGAACAGCAG
CTTACAGCAG CCAGGACAAA GCTGGACACT GCCTCTAAAA AGCTGGAACT GGCCCGGGAG
CAACTGAAGC AGACTGAAGT AAGTTATGAA CAGGCGGAAA AGAGTTATAA GAGGATGGAG
TACCTCTATG AAGAGGGAGT AATTACTGAA AGTGAATTTG ATAAAGTTAA AACCCAGTAT
GAAAATGCAA AATCTGCTCT CAAGTCGGCT GAACTGGGAC TGGAACAGGC TAAGGTCAAT
TATGAGGGGG CCCTTAAAGG GTATAATCTG GTTAAAGAAA TCTATGAAAA CCCCCGGTCC
CTGGAACAGC AGCTTTTAAA TGCTGAAACC CAGTATGAAG TGGCCAAAGC CAACCTCCAG
ATTGCTAAAG CCAACCTGGA CCAGGTTCTA ATGGGGGCTG AAGAGGAGGA TTTACAGTCA
GCCCGGGCCC AGGTGGAACA GGCTGAAGTT GCCCTGGAAT TGGCCAACAT TAGACTCAGG
GATAGTGTCT TAGAAAGCCC GTTTCCGGGA CTTATTGCTG CTGTTAATAT TAATGAAGGT
GAGATGGCCC CTCCAGGAAA TCCTGTTATC AAGGTTGTTA ACCTTGATAA AGTGTATGCT
GAAATTGAGG TATCAGCCAG TACAGTAACC AGTTTAGAGA CAGGTGATCT AGTAAGAGTA
GAGATCCTTC CACTGGCTAA TATGTCTATG ACAGGTAAAA TAGAGACAAT TGCTCCTGAT
GTAGATCCGC GGAGCAGAGC CTATCCTGTT AAGGTAGTTA TCCCCAATTC GAAAAATATG
ATTAAAGGGG GAATGTATTG TCGGGTTTAC CTTACGTTAA AAGAGTCAAA TCGTGGGGTA
GTTGTCCCGG TAGATTCTGT TCTTGACCTG GAAGAAAAAC CCTATATATT TGTAGTTAAT
AACGGTAAGG CTGAAAAGAG ATTTATTGAG ACGGGCTTAA TTAACGATAC AGAAGTTCAG
GTCATTGATG GTTTGAATCC TGATGAAAGA GTTGTAGTCA AGGGCCAGTA TAAACTTACC
GATGGGGCTC CGGTTAAGGT GGTGAACTAA
|
|---|
| Protein sequence | MKPNKPVIVT LMFLMLVTLL SGQVFGETQI PVSVIEPGVK SIRVEESVTG VIKPYQVVNL
STKTGGIVDE ILVEVGQRVE AGEPLLKLEQ EELKAQVKQA RAQLAMARAS FKKIKDGASP
EDVEKVRGAY NQALASYNGA RKALNIIKDM YEDKTSQEQQ LTAARTKLDT ASKKLELARE
QLKQTEVSYE QAEKSYKRME YLYEEGVITE SEFDKVKTQY ENAKSALKSA ELGLEQAKVN
YEGALKGYNL VKEIYENPRS LEQQLLNAET QYEVAKANLQ IAKANLDQVL MGAEEEDLQS
ARAQVEQAEV ALELANIRLR DSVLESPFPG LIAAVNINEG EMAPPGNPVI KVVNLDKVYA
EIEVSASTVT SLETGDLVRV EILPLANMSM TGKIETIAPD VDPRSRAYPV KVVIPNSKNM
IKGGMYCRVY LTLKESNRGV VVPVDSVLDL EEKPYIFVVN NGKAEKRFIE TGLINDTEVQ
VIDGLNPDER VVVKGQYKLT DGAPVKVVN
|
|---|
| |