| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_04030 |
|---|
| Symbol | |
|---|
| ID | 7314078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothermothrix orenii H 168 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011899 |
|---|
| Strand | + |
|---|
| Start bp | 413472 |
|---|
| End bp | 416798 |
|---|
| Gene Length | 3327 bp |
|---|
| Protein Length | 1108 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643610827 |
|---|
| Product | Exodeoxyribonuclease I subunit C |
|---|
| Protein accession | YP_002508157 |
|---|
| Protein GI | 220931249 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0419] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0894457 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACCGC TGCTTCTTAA AATTTCGGGT TTAAATAGCT TTGTCCAGGA AGAGATTATT
AATTTTAAAA AGCTGACCGA AAAAGGGTTA TTTGGTATTT TTGGTCCCAC CGGGAGTGGT
AAGTCGAGTA TTTTAGATGC CATAACCATT GCCCTTTATG GGAAAATAGC AAGGGATACC
AAAGAATTTA TTAATAAAGA GACCGGCGAG CTTTATGTCT ATTTCGAATT TGCCATGGGA
AGTAATCAAA AGACTTATTG TATTGACAGA AAACTGAAGA CCTCTGATAA CAATGGATAT
ACTACCTCAC GGGTTCGCCT TGCCATTAAA GAAAATGGCA AGGTTGAGGA AGTCTATGAA
AAAGTGAGGG AAGTCGAGGA TAAGGTTGAA AAAATTATTG GCCTTAATCA TGAGGATTTT
ATGCGAACCG TGGTTTTACC CCAGGGACAG TTTAGTGAGT TTTTAACCCT TCAAGGAAAG
AAACGGCGGG ACATGCTGGA AAGGATTCTT AACCTGGAAG AGTTTGGTGA AAGATTGATG
GAGAAATTGC GGTTACGGAA AAATATAAAA GAGAGTCAAC TAAAAAGTGT GGAAACTATC
CTGACCAGTT ATGAGGATGT ATCAGAAAAG AGTCTTGAAG ATATCCTCAA TAAACTTGAA
AATCTTAAGA AAGAAATTGG TTATAAAAAA AAGAGGTTAC AGGAAAAGAG AAATGAGTAT
GAGAAATATA AAGAAGTCTG GACCAGGCAG AAACAGCTTT TAAAATACCA GGAAAAACTT
GATACTCTAG AGGAACGTTC TGAGAGAATC TCTAACCTTA AAAACAAAAT GGAACAGGCT
AAAAAGGCCC TGAACCTGAA AAAAGATATA AACAGGCTGG AAAGATATCA TCAGGAGCGA
AAAGAAACTA ACCAGAAGGT AGAGAATCTG GAGAAAATGA TTGTAGATTT AAGGGAAAAG
AGGGATAGAT ATAACCGTGA GTACGAAGAG AGCCTCAGGG CAAAAGAAAA AGAATTACCT
GACCTAACAA AAAAGAAACT GGAAATCAAG GATGCTATTA AACTCTATGA GCAAAATAAA
GGGATAAAAA AAGAGGTAAC CGGGAAAGCA GAAAAATTAA AACAAATGGT GCAGGATAAA
AATAGTCTTG AAGAATATTT AAAAAGGGGT CAGGAAAAAT CCCGGGTGAT CAAACAGCAA
ATCAAAGACC TGGAAGACAT CATTGAAAAA CAGGTCATTA ATTCAGATTA CCGGAAAACA
ATAATGGCAG GGCTTAACCT TGAAAGAGAC TATAAGCAGG TTCAAAAAGA CATTAAGGTG
ATTAATCAGG GGATAAAGAG GCTTGAAAGG GAAATATGGA GCCTTGATGA AAAGAGGAAG
GATAAATCTG GAGAATTAAA AAGAATTGAA AGTGGAATCC TTTATCAATA TGAAAAAATA
ATTGGTGATA AAGAAAAAGC GGAGAGGGAG TTAAACGGGC AGAAGGAAAA ACTTGAAGAT
GACATTAATA AAAAAAGAAA ACAACTGGAA GATTTAGAAA AGGAAATTGA AGATTATAAA
ATTAGAAATC TGGCAGGTAT TCTGGCCGGG AAATTAACTG AGGGTTCTCC ATGCCCGGTC
TGTGGCTCGA CTGAACACCC CCGGGTAGCT GAGAAAATTG ATAAAGCGGG GCTTCAAAAG
CTCCTGAATA CCAGAAAAGA GATCGATAGC AAATTAACGG AATTAGAGGA GAGGTTAAAT
AAATATAATT CCGGGATGAG TATTTTAAAT AAAGAACTTA CCAGATTACG GCAGGAAAAA
GAAGAAGTGA TTTTATCATT TGACAATGTT CTGTCAGAAC TTGAAGAATA TGATGGAGTT
TTAACAACAG GTCCGGGGGA GTTGAGAAGA AAGAGGGACA GGGTAAAAAA TGAGTTGACA
AAATATACTA CCCAGTTGGA AACAAAGCAA AAAGATCTTG CTGACAGGAA AGATAAAATG
AAAGAATTAA AGAGTCTTAA TAGTACCTTG AAACAGGAGT ATTTTAAATT AATCGGGGAA
CTTGGCATTG ATGATATTGC TGATGAACTT GAAAATATAA ATAAAAAGGA TAAAGAGAGG
GAAAATTACC AGAAGAGGCT TACCCAATTA CGTCAGCAGT ATGAAAAGAT TAATAACCGG
ATTGAAAATT ACCGGGTTAG CTTTAATGAA ACTGAGAGGG AAATTACGAT TTTTGAACAT
AAGATACAAA CACTAAAGGA TAAATATCAG GAAAATAGAA AAGAGATTGA AAATAAGGTT
GGTGACAGGG ATCCCCTTCA TTATTTAAAA GAGGTTGAAA GCCGGGAAGA AGAGTTGAAA
AAAAGGGTAG ATAAATATAA AAAGGCCCTT GAAGATACTA CAGACCTTTT AAATAACAAA
GAACGTCTTA TGGAGAGGTT AAAACAAAAC CGGGCTACCC TGATAAAAGA AATCAGTGAT
ACAGAGCAAT ATTTAAAAGA GAAAATGGAT GAGTATAAAT TTGAGAGTTT TGATGATGTA
CGCAAATACC TGTCCTGGGA AAACCAGATC AGGGCCTGGG AGGAAGAAAT AACTGAGTTT
GAAGATTTAA AAAAAGAGGT AGAAAGTAAT ATTACCAGAT TAAAAATGGA GCTTAACGGA
CAGTCCATCA GTCAGGAGCG GTGGACTAAA ATAAAGGCTG ACAGGGAAAG CCTTGAAGAG
AATCTCAGCA GGCTACAGGA AGAACTTGGT TCCTGTAAGC AGACTATTGA GGAATTGAAA
AGAAAGCTGG AGCTTAAGCG CAAAAATCAG GAGAAAAAAG AGGAACTGGA GCATGACCTG
GCAGTTATTA AGGATATTAA TGACCTTATC AGGGGCAAAA GTTTTGTTGA ATTTGTGGCC
ATGAAACAGC TGAGGTATAT AGCCCTGGAG GCTTCCAGCA GGTTGATGGA AATAACTAAT
AACAGGTACA AACTGGAGCT GGATAATCAG GGTGAATTCG TTATCTGTGA TAATTACAAT
GGAGGTGTCA GGAGAGACTG TAAAACCCTG TCCGGAGGAG AAACTTTCCT GACATCCCTG
TCACTGGCCC TGTCCCTGTC CTCCCATATT CAGCTCAAGG GTAATTCAAA TATGGAATTT
TTCTTCCTTG ATGAGGGGTT TGGAACACTG GATGTCAACC TGTTGGATAT TGTTATGAAT
TCACTGGAGC GGTTGCATAA TGAACACCTG ACGGTCGGTA TTATCAGTCA TGTTGAAGAA
CTTAAAAACA GGGTCCCGGT TAAGCTTATG GTCGAACCGG CTGAACCGGG ACTTCATGGT
AGCCGGGTCA GGATTGAATA TACATAA
|
|---|
| Protein sequence | MRPLLLKISG LNSFVQEEII NFKKLTEKGL FGIFGPTGSG KSSILDAITI ALYGKIARDT
KEFINKETGE LYVYFEFAMG SNQKTYCIDR KLKTSDNNGY TTSRVRLAIK ENGKVEEVYE
KVREVEDKVE KIIGLNHEDF MRTVVLPQGQ FSEFLTLQGK KRRDMLERIL NLEEFGERLM
EKLRLRKNIK ESQLKSVETI LTSYEDVSEK SLEDILNKLE NLKKEIGYKK KRLQEKRNEY
EKYKEVWTRQ KQLLKYQEKL DTLEERSERI SNLKNKMEQA KKALNLKKDI NRLERYHQER
KETNQKVENL EKMIVDLREK RDRYNREYEE SLRAKEKELP DLTKKKLEIK DAIKLYEQNK
GIKKEVTGKA EKLKQMVQDK NSLEEYLKRG QEKSRVIKQQ IKDLEDIIEK QVINSDYRKT
IMAGLNLERD YKQVQKDIKV INQGIKRLER EIWSLDEKRK DKSGELKRIE SGILYQYEKI
IGDKEKAERE LNGQKEKLED DINKKRKQLE DLEKEIEDYK IRNLAGILAG KLTEGSPCPV
CGSTEHPRVA EKIDKAGLQK LLNTRKEIDS KLTELEERLN KYNSGMSILN KELTRLRQEK
EEVILSFDNV LSELEEYDGV LTTGPGELRR KRDRVKNELT KYTTQLETKQ KDLADRKDKM
KELKSLNSTL KQEYFKLIGE LGIDDIADEL ENINKKDKER ENYQKRLTQL RQQYEKINNR
IENYRVSFNE TEREITIFEH KIQTLKDKYQ ENRKEIENKV GDRDPLHYLK EVESREEELK
KRVDKYKKAL EDTTDLLNNK ERLMERLKQN RATLIKEISD TEQYLKEKMD EYKFESFDDV
RKYLSWENQI RAWEEEITEF EDLKKEVESN ITRLKMELNG QSISQERWTK IKADRESLEE
NLSRLQEELG SCKQTIEELK RKLELKRKNQ EKKEELEHDL AVIKDINDLI RGKSFVEFVA
MKQLRYIALE ASSRLMEITN NRYKLELDNQ GEFVICDNYN GGVRRDCKTL SGGETFLTSL
SLALSLSSHI QLKGNSNMEF FFLDEGFGTL DVNLLDIVMN SLERLHNEHL TVGIISHVEE
LKNRVPVKLM VEPAEPGLHG SRVRIEYT
|
|---|
| |