Gene Hore_02300 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_02300 
Symbol 
ID7312550 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand
Start bp236182 
End bp238194 
Gene Length2013 bp 
Protein Length670 aa 
Translation table11 
GC content45% 
IMG OID643610653 
ProductDNA ligase, NAD-dependent 
Protein accessionYP_002507986 
Protein GI220931078 
COG category[L] Replication, recombination and repair 
COG ID[COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) 
TIGRFAM ID[TIGR00575] DNA ligase, NAD-dependent 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000000139643 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCAGTA AAGTAGAACA GGAAATAAGG GATTTAAGGG AGAAGATACG GTATCATGAG 
TACCGGTATT ATGTTCTAGA TGACCCGGAA ATATCTGATG CTGAATTTGA TGAATTGATA
CAGAGGCTTA TTGATCTGGA GGAAAAGCAC CCTGGCCTGG TGACCCCGGA TTCTCCTACT
CAACGGGTCG GTGGAGAGCC TCTTGATAAA TTTGATAAAG TAGAGCACCG GGTTCCCATG
CTGAGCCTTG GTAATGCATT TAATGAGGGT GATTTAACGA ATTTTGCCAG GCGGATTTAC
CGGCTCCTTG ATACAGGCAA AATAGACTTC GTGGTGGAAC ATAAAATCGA TGGGTTATCA
GCGATATTAA CCTATCAGGG TGGTAGGTTG ATCCGGGGAG CAACCCGCGG TAATGGAGTG
GTGGGGGAAG ATGTTACCGC CAATATAAAG ACCATCCCTT CTGTACCCCT CAGGTTAAAA
AAAGATGTTG ATATCGAAGT CCGGGGTGAG GTATATATAA AAAAAGATGA TTTTAGTAAA
TTAAATGAAA GGAGATTGAA GAAGGGAGAA GAACCCTTTG CTAATCCCCG GAATGCAGCG
GCAGGTTCAA TTAGACAGCT TGACCCCAGG CTGGCTGCCG CCCGTCCCCT GTCCTTTATT
GCCTACGATG TAGTTGCCTA TGAAGGAGAA GGTTTACAGA CCCATGTCGG GGCCCTGGAA
TTACTCCGGG AGCTTGGTTT TAAGGTGAAC TGGTATCGTA AATGTGATGA TATTACAGAG
GTAGTAAATA TTTGTAAGGA CTGGGTGGAT AAAAGAGAAG AATTACCCTT TGAGATAGAT
GGTATGGTTA TTAAGGTCAA TGAACTGGGT CTGAGAGAAC AGCTGGGAGC TACTGCCAAA
AGCCCCCGCT GGGCCATTGC TTATAAATTC CCTGCCCAGC AGAAGACAAC TGTTGTTAAA
GATATTATTA TTTCGGTAGG CCGGACCGGG GCCTTAACAC CGACAGCTGT CCTGGAGCCT
GTTGAGGTTG ATGGTTCTAC AGTCAGCAGG GCAACTCTCC ATAATGAAGA TGAAATAAGG
AGAAAAGATG TTAGAATAGG GGATCATGTC CTGGTTCAAA AAGCAGGTGA TGTCATCCCT
GAAGTGGTTA AGGTTATAAA GAGTAAACGG GATGGCAGTG AACAGATATT TCACATGCCC
GAAACCTGCC CTGCCTGTGG TGGGGAGGTT GTGAGGGAAG AAGGTGAAGC TGTTTTAAGG
TGTGTTAATG TGACCGGGTG CCCTGCCCAG AGACGGGAAG GAATTCTTCA CTTTGTCTCC
CGGAATGCCA TGAATATTGA TGGCGTGGGG CCAGCCCTGA TAGACCAGCT TTTAGAAAAA
GGGTTGATAG AAGATTATGC TGATTTATAT TACCTTAAAA AAGAGGATTT GATTCCTCTG
GAAAGAATGG GGGAAAAATC AGCTACTAAT GCCATTGAGG CTATCAGGGC CAGTAAGGAC
AGGCCTCTCT TTAGAGTTAT TTTTGCCCTG GGGATCAGGC ATGTCGGTCT GGGGGTAGCC
CGGGTTTTAA CTGAAAAATA CCGGTCATTG TCTGATTTAA TGAGGGCATC CGGGGAAGAA
CTGGTGGCTA TTGATGAAAT TGGTCCTACT ATAGCCCGGA GTATTATTGA ATTTTTTAAG
GAGCCCCATA ACCGGGAGGT TATTAATAAA TTAAAAGAAG CCGGGGTGAG ACTTGAGGAG
AAGGAAAATG GAAAAGAAGA GCAGAATTTA TACCTGTCAG GAAAAACATT TGTCTTTACC
GGTAAATTAG ATGGTTTTAC CCGGAGTGAA GCCAGAGATA AGGTTATAGC AGCAGGAGGA
AAGGTTACTT CAAGTGTCAG CCGGAAAACC GACTATGTAG TGGTCGGAGA TAGTCCCGGT
TCCAAATATG ATAAAGCCCG GGAGTTGGGG GTAACTATTT TAGATGAAGA TAAATTTAAA
GAAGTGTTAA AAGCGGGGGA TAATAATGGT TAG
 
Protein sequence
MASKVEQEIR DLREKIRYHE YRYYVLDDPE ISDAEFDELI QRLIDLEEKH PGLVTPDSPT 
QRVGGEPLDK FDKVEHRVPM LSLGNAFNEG DLTNFARRIY RLLDTGKIDF VVEHKIDGLS
AILTYQGGRL IRGATRGNGV VGEDVTANIK TIPSVPLRLK KDVDIEVRGE VYIKKDDFSK
LNERRLKKGE EPFANPRNAA AGSIRQLDPR LAAARPLSFI AYDVVAYEGE GLQTHVGALE
LLRELGFKVN WYRKCDDITE VVNICKDWVD KREELPFEID GMVIKVNELG LREQLGATAK
SPRWAIAYKF PAQQKTTVVK DIIISVGRTG ALTPTAVLEP VEVDGSTVSR ATLHNEDEIR
RKDVRIGDHV LVQKAGDVIP EVVKVIKSKR DGSEQIFHMP ETCPACGGEV VREEGEAVLR
CVNVTGCPAQ RREGILHFVS RNAMNIDGVG PALIDQLLEK GLIEDYADLY YLKKEDLIPL
ERMGEKSATN AIEAIRASKD RPLFRVIFAL GIRHVGLGVA RVLTEKYRSL SDLMRASGEE
LVAIDEIGPT IARSIIEFFK EPHNREVINK LKEAGVRLEE KENGKEEQNL YLSGKTFVFT
GKLDGFTRSE ARDKVIAAGG KVTSSVSRKT DYVVVGDSPG SKYDKARELG VTILDEDKFK
EVLKAGDNNG