Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hore_01090 |
Symbol | |
ID | 7313236 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothermothrix orenii H 168 |
Kingdom | Bacteria |
Replicon accession | NC_011899 |
Strand | + |
Start bp | 124653 |
End bp | 127925 |
Gene Length | 3273 bp |
Protein Length | 1090 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 643610531 |
Product | DNA-directed RNA polymerase, beta subunit |
Protein accession | YP_002507865 |
Protein GI | 220930957 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0000929297 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAAGG GATTGAGGAG AGAAAGGTAT AGTTTTGCTA AAATTGAGGA TGCACATGAA GCACCTTATT TACTTAACAC ACAGATAAGC TCTTATAATT GGTTTCTGGA GGAAGGGTTA AAAGAAGTAT TTGAAGAAAT TTCACCAATT GAGGATTTTT CTGAGAACCT TGTCCTGGAA TTTGTCGATT ACCATCTGGG AGAGCCCAAA TACAATGAAG AAGAGTGCCG GGATAGGGAT GCTACCTATG CAGCACCCTT ACAGGTAAAA GTAAGATTAA TAAATAAAGA TACCGGTGAA GTTAAAGAAC AGGAAGTTTT TATGGGTGAT TTCCCTTTAA TGACAGACAA GGGAACCTTT ATTATTAATG GTGCCGAAAG GGTAGTTGTT AATCAGTTAA TCCGGTCTTC AGGTGTTTAT TTCGGGGAAG AGAGAACTAA AGATGGTAGG CGTCTCGTTT CTGCCAATAT AATTCCTAAT AGAGGGGCCT GGATTGAATT CGAGTATGAT AAAAAACGAA TTGTTTCAGT CAGGGTTGAC AGAACCCGTA AAATGCCATC AACTGTACTC TTTAGAGCTC TTGGTTATGG AACAGATGCT GAATTAATAG ATTTATTCGG TGAACATGAA GTTATACATG ATACCCTTGA AAGGGATAAC ACTGATTCCC AGGAAGAAGC CCTGATTGAA TTATATAAAA GGTTAAGGCC GGGTGAACCT CCCACTGTTG AAAGTGCTAA AAATTTACTA GAATCATTAT TCTTTGATCC CAAACGGTAT GACCTGGCCC TTGTCGGAAG GTATAAAATT AATAAAAAGC TGGGCCTTGA CATTGATCCT GATAAAAAAT GCCTTGATAA GAGGGATATT GTAGAAACAG TACGTTATTT GCTGAGAATT ATAGATAATG ATCCGGAGGC CAGTATTGAT GATATAGATC ATCTGGGGAA TCGTCGTTTA AAGACTGTTG GAGAATTGTT ACAAAATCAG TTCAGGATCG GTTTATCCAG AATGGAACGG GTTGTCAAGG AAAGAATGAC TATTCAGGAC ATAGATGTAG TAACACCCCA GGCTTTAATT AATACCAGAC CAGTAGTGGC ATCTATTCAG GAGTTTTTTG GAAGCAGTCA GTTATCTCAG TTTATGGACC AGACCAATCC CCTGTCTGAA CTGACCCATA AGAGGAGATT AAGTGCTCTT GGACCGGGTG GGTTAAGTCG AGACCGGGCC GGTTTCGAAG TCAGGGACGT ACATCACTCT CATTATGGTA GGATCTGTCC AATTGAGACA CCGGAAGGTC CCAATATTGG TCTAATAGGA TCAATGAGTA CTTATGCCCG TACCAATAAA TTTGGTTTTC TGGAAACACC ATATAGAAAA GTAGTTAATG GTAAGGCAAC CAATGAAATA GAATATTTAA CTGCTGATGA AGAAGATAAA TACACCATTG CCCAGGCTAA TGAACCCTTT GATGAAGATG GTAATTTCTT AAATGACCTT GTAATTGCCA GACATCGTGG TGATATTCTG GAAGTATCTC CTGAAAAAGT TGATTATATG GATGTTTCTC CAAAACAGCT AGTTGGGGTT TCTGCTTCAA TGATACCCTT TTTAGAAAAT GACGATGCTA ACAGGGCCCT AATGGGAGCA AACATGCAGC GGCAGGCTGT TCCCCTTATT AAACCTGATG CCCCCATTGT GGCTACTGGA ATGGAATATA GAGCGGCTAA AGACTCCGGG GTTGTAATTA TTGCAAAAAA TTCAGGTGTA GTTACCAGGG TTACCGCTGA TGAGATTGTC ATTAAAACAG ATGATGGTAA GATTGATACC TACAAAATCC TTAAATTTAA GCGTTCAAAC CAGGGTAGTT GTATAAATCA GCGTCCTATA GTCCGGAAAG GCCAGCGTGT TGACAAAGGC GATGTTATCG CTGATGGTCC GTCAACAGAC CATGGTGAAA TGGCCCTGGG ACGTAATACT TTGATTGCCT TTATGCCCTG GGAAGGTTAT AATTATGAGG ATGCTATTTT AATCAGTGAA AAACTGGTTA AAGAAGATGC CTTTACTTCA GTTCACATAG AAGAGTATGA GGCTGAAGCC CGGGATACAA AACTTGGCCC TGAAGAAATT ACCAGGGATA TCCCCAATGT TGGCGAAAAT GCTCTTAAAA ACCTTGATGA ACGCGGTATA ATCAGGGTAG GAGCAGAAGT AAAAGAAGGA GATATTCTGG TCGGCAAGGT TACCCCTAAA GGTGAAACCG AGTTATCAGC CGAAGAAAGG TTGTTAAGAG CTATCTTTGG TGAAAAGGCC AGGGAAGTCA GGGATACTTC CCTGAAAGTA CCCCATGGTG AAGAAGGTAT TATTGTTGAT GTTAAAGTCT TTTCCAGGGA AAATGGAGAC GAATTAAAGC CCGGTGTAAA TAAACTGGTC AGGGTTTATG TAGCTACCAA ACGCAAGATT TCTGTTGGTG ATAAAATGGC CGGACGTCAC GGTAATAAAG GTGTAATATC CAGGATTTTA CCGGAAGAAG ATATGCCCTT TTTACCGAAT GGTGAACCAG TTGAAGTAGT ACTGAATCCC CTGGGTGTAC CATCACGTAT GAATATCGGG CAGGTTCTGG AAACTCATCT TGGACTTGCT GCCAAAGCCC TGGGGCTTTA TGTTGAGACA CCTGTATTTA ATGGAGCTCT TGAAGAAGAA GTAGAAGATT TACTCGAAAA AGCCGGGTTT GACAGGGATG GCAAGACTGT TCTTTATGAT GGGCGAACAG GTGAGCCCTT TGATAATAGA GTAACTGTTG GTTATATGTA TGTTCTGAAA CTCCACCATC TGGTAGATGA TAAGATTCAT GCCCGTTCTA CCGGACCTTA TTCACTGGTT ACCCAGCAGC CTCTTGGTGG TAAGGCTCAG TTTGGTGGCC AGAGGTTCGG TGAGATGGAA GTCTGGGCTC TGGAAGCATA TGGTGCTGCC TACAGTCTGC AGGAAATGTT AACTATCAAA TCAGACGATG TTGTGGGCAG GGTAAAAACC TATGAGGCCA TTGTAAAAGG TGAAAATGTT CCTGAACCAG GAATTCCCGA ATCGTTTAAA GTACTAATCA AAGAGATGCA GAGTCTTGGA CTTGATGCCA AAATCTTCAC CGAGGATGAG GAAGAACTGC AAATCGCAGA GGAAGAAGAA GAGTTTACTG ATACTGCAAA AAAACTGGGA CTTGATATGG ATCTAAGTGA TAACAATAAG AAAGGTTCTG AAAAAGATTC CAGTGAAGAA TAA
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Protein sequence | MAKGLRRERY SFAKIEDAHE APYLLNTQIS SYNWFLEEGL KEVFEEISPI EDFSENLVLE FVDYHLGEPK YNEEECRDRD ATYAAPLQVK VRLINKDTGE VKEQEVFMGD FPLMTDKGTF IINGAERVVV NQLIRSSGVY FGEERTKDGR RLVSANIIPN RGAWIEFEYD KKRIVSVRVD RTRKMPSTVL FRALGYGTDA ELIDLFGEHE VIHDTLERDN TDSQEEALIE LYKRLRPGEP PTVESAKNLL ESLFFDPKRY DLALVGRYKI NKKLGLDIDP DKKCLDKRDI VETVRYLLRI IDNDPEASID DIDHLGNRRL KTVGELLQNQ FRIGLSRMER VVKERMTIQD IDVVTPQALI NTRPVVASIQ EFFGSSQLSQ FMDQTNPLSE LTHKRRLSAL GPGGLSRDRA GFEVRDVHHS HYGRICPIET PEGPNIGLIG SMSTYARTNK FGFLETPYRK VVNGKATNEI EYLTADEEDK YTIAQANEPF DEDGNFLNDL VIARHRGDIL EVSPEKVDYM DVSPKQLVGV SASMIPFLEN DDANRALMGA NMQRQAVPLI KPDAPIVATG MEYRAAKDSG VVIIAKNSGV VTRVTADEIV IKTDDGKIDT YKILKFKRSN QGSCINQRPI VRKGQRVDKG DVIADGPSTD HGEMALGRNT LIAFMPWEGY NYEDAILISE KLVKEDAFTS VHIEEYEAEA RDTKLGPEEI TRDIPNVGEN ALKNLDERGI IRVGAEVKEG DILVGKVTPK GETELSAEER LLRAIFGEKA REVRDTSLKV PHGEEGIIVD VKVFSRENGD ELKPGVNKLV RVYVATKRKI SVGDKMAGRH GNKGVISRIL PEEDMPFLPN GEPVEVVLNP LGVPSRMNIG QVLETHLGLA AKALGLYVET PVFNGALEEE VEDLLEKAGF DRDGKTVLYD GRTGEPFDNR VTVGYMYVLK LHHLVDDKIH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAA YSLQEMLTIK SDDVVGRVKT YEAIVKGENV PEPGIPESFK VLIKEMQSLG LDAKIFTEDE EELQIAEEEE EFTDTAKKLG LDMDLSDNNK KGSEKDSSEE
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