Gene Hore_00880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_00880 
Symbol 
ID7314310 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand
Start bp106731 
End bp108086 
Gene Length1356 bp 
Protein Length451 aa 
Translation table11 
GC content43% 
IMG OID643610510 
ProductDNA repair protein RadA 
Protein accessionYP_002507844 
Protein GI220930936 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1066] Predicted ATP-dependent serine protease 
TIGRFAM ID[TIGR00416] DNA repair protein RadA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000000000121912 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCAGAC CTAAAACCTA TTATATCTGC AGTGAATGTG GTTATAAATC TGCTAAATGG 
ATGGGACGTT GTCTAAACTG TGGTGCCTGG AATACTTTTC AGGAACTGGA TGAAGAAGCC
ATTGAGGAAA AGGTGGATAT CAAGGTTACC CCTAGTTCAA TAACTGATAT AAAAGCCGGG
GCCTGTCCCC GGCTTTCTTC CGGTATTGGG GAGTTTGACA GGGTGCTTGG TGGAGGTGTT
GTGCCCGGTT CTTTAATTCT ACTTGGAGGT GCCCCTGGAA TAGGTAAATC GACCCTGGTT
CTTCAAATGG CCAGGCACTT CAGCGAAAAA TATGGAAAAG TTTTATATGT CAGTGGTGAA
GAATCAGCTT CCCAGTTAAA AATGAGGGCC GGGAGGCTCG GGGCTATAAA TGAGGATTTA
TATGTTCTTT CTGAAACTAA TTTTCAACAA ATTTATGGTG TTATACAAAA TGAAAAATAT
GAATTAATAA TAATAGATTC TATACAAACA ATATTTGACC CCCGGATTGA ATCTACCCCC
GGTAGTATAA GCCAGGTTAA GGAAGTTACT AATAGGTTAC TTATTCAGGC CAAGAAACTG
GAAGTTCCCA TCGTTTTAAT AGGACATGTT ACCAAGGAAG GACATCTGGC CGGTCCCCGG
GTCCTGGAAC ATTTGGTTGA TACAGTTCTT CAGTTTGAAG GGGACAGGAA TTACATCTAT
CGAATTCTCA GGGCAGTAAA AAATCGTTTT GGCTCTACAA ATGAGATAGG TGTCTTTGAA
ATGATGGGAA GTGGTATGAG AGAAGTGGTT AATCCCTCGG AAATTTTCCT TAAAGGGAGG
GCCCAGGGGG TATCGGGTTC TGTGATAGTT CCGGTTGTCG AGGGGAGTAG ACCCCTTCTT
GTTGAGGTTC AGGCCCTGGT AACCTACTCG AGTTTTGGGA CCCCCCAGCG GTTAACAACC
GGTGTTGACC GGAAGAGGGT TTCTATTTTA CTGGCTGTCC TGGAGAAAAA GGCTGGTATT
AATTTTCATA ATCAGGATGT TAATATTAAT ATAACAGGGG GCTTAAAAGT AGAAGAGCCG
GCCCTGGATC TCGGTATAAT AACAGCTATT TTATCAAGTT GTAAAGACCA GGAGGTAGCT
CCGGACCTGG CTGTGATTGG AGAAGTAGGA CTGGCCGGGG AGATACGGGC TGTCAGTCAG
ATAGAGAGGC GTTTAAGTGA ATTAAAAAAG ATGGGCTTTA AGGAAGTTGT TATTCCTGGA
GGCAATATAT CTGGTCTGGA CTTTGACCCG GATATTAATA TAGTTGAAGT TAAAAATGTT
AATGATCTCA TGAAGATATT GTTTAACAGG AGGTGA
 
Protein sequence
MPRPKTYYIC SECGYKSAKW MGRCLNCGAW NTFQELDEEA IEEKVDIKVT PSSITDIKAG 
ACPRLSSGIG EFDRVLGGGV VPGSLILLGG APGIGKSTLV LQMARHFSEK YGKVLYVSGE
ESASQLKMRA GRLGAINEDL YVLSETNFQQ IYGVIQNEKY ELIIIDSIQT IFDPRIESTP
GSISQVKEVT NRLLIQAKKL EVPIVLIGHV TKEGHLAGPR VLEHLVDTVL QFEGDRNYIY
RILRAVKNRF GSTNEIGVFE MMGSGMREVV NPSEIFLKGR AQGVSGSVIV PVVEGSRPLL
VEVQALVTYS SFGTPQRLTT GVDRKRVSIL LAVLEKKAGI NFHNQDVNIN ITGGLKVEEP
ALDLGIITAI LSSCKDQEVA PDLAVIGEVG LAGEIRAVSQ IERRLSELKK MGFKEVVIPG
GNISGLDFDP DINIVEVKNV NDLMKILFNR R