| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_3248 |
|---|
| Symbol | |
|---|
| ID | 7311826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 3800943 |
|---|
| End bp | 3802745 |
|---|
| Gene Length | 1803 bp |
|---|
| Protein Length | 600 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 643610149 |
|---|
| Product | putative sensor with HAMP domain |
|---|
| Protein accession | YP_002507517 |
|---|
| Protein GI | 220930608 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2972] Predicted signal transduction protein with a C-terminal ATPase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTGGTGA ATATTATCCA ATACATACGA AAGACACCAC TCAGGTATAA GATTACATTA
GCTGTAGTTC TTTTGCTCCT GTTATCCATG TCTCTAATTG GCTTTTATTT CTATTGGAAC
ATGGCTTCAG TACTGACCAA AAACGCCAAT GACAATTTGG TTAATCTCAT TCAGCAAGCA
AACGGAAATA TTGAAAATTC CTTTAAAATA ATTGATACTA CATCGCTCCA TTTTCTTTCC
AATAAATCTA TGAGATCCTG GACCTTGGAC GATACATCTT TTGATGGAGA TTTCTACAGT
ATTTTCATCA ATAAAAGACA TATTGAAGAA GACCTCAAGT ACAGCCTGAT GTTTAATAAC
GCATGGGATA TGAACCTTAT TTCTACAGCT TATGTTTTTT TGAACGAAGA CACATATTGT
TCCATTTTCA AATCAACACC AAATATACAG TTGATAAACG ATAACCATAT AAATATTTTT
AAAAGAATAA GCGGCAGCAA AATCAGAGGC AAGACAATGA TACCACCTTC CTTGAATGAC
AAGACCATTT ATTTTACCCG TATAGTTACA AACATTAGTA ACCCTAAGCA AAGATTGGTA
ATGATTTTTG GAACCGAAGA GGAAGAGTTC TATAAGAAAT ATTCTGAACT TCTTTCATTT
GAAGGGTCAA TGGTATATAT TACGGATGAA AAAGGTATTA TCTACTCAAG TTCTCAGAGA
GACAATCTTG GAAACAATGT ACCTTCCTCT ATCCTGAATT TAAGGAACGA TACAGGTGTT
TCAGAAGTTG ACATAGGAAA TGTCACCTAT TTAATTGCCC ATAGGAAAAT AAGTGACACC
GGACTAGACT TTATAGCTGG AATTCCTAAA GAACAGGTTT TGGCAAAGCT GTCCGACAGT
ATGAAAAATT ATATTGTCAT TACAGCTATT ATTGTATTTA TATCCGTATT TTCCGGAATT
ATTATTTCCC TAAGATTTAC AAGGTTTGTA AGAGATATGC TCTCTGTTAT CAACAGGGTA
AAAGTAGGAG ATTATGATGT AAAAATGCCT TATTACAAAG ACAACGAACT CAAACTGGTG
AGCAATACCT TCAACAATAT GACATATGAA ATAAAGTATC TTATAAATCA GGTTTATGAA
AAGCAATTAC TAATAAAAGA GACAGAATTC AAATTTCTTC AGTCTCAAAT GAATCCGCAT
TTTCTTTTCA ATACCCTAAT CACCATTGGA TATAAAGCCA AGTTGTCAAA AGATGAAACA
GTATATAAGA TGGTCACATC CCTTACAGAG CTGTTACAGG CAGGTATTTA TTCCAATAGC
CAGGCAAAGA TTCCTATAAG GCAGGAATTG GAGTTTATAG ACTTTTATCT CTACTTGCAG
AAGATGAGGT TCGGCGACAA GCTTGAGTAT AAAATTTATG TTTCTGATGA AAGTATTTTA
AATTTTGTAC TTCCAAAACT GAGTATTGAA CCTCTTATAG AGAATGCCGT AGTTCACGGA
CTTGAGGAAA AGGTTGGAAA AGGGACTATA GAATTGAATA TCCGAAGGGA AAACGAATCC
ATATTTTTTG TAGTTACAGA TGACGGTGCC GGTTTTAAGA CCGACAAAAT AAATCTGGAT
GATAATGATA CCATTAACAT GCGCAAGAAG GGACATAACA GTATAGGCCT TATGAATACC
CACAAAAGAA TCAAGCTGAT GTATGGAGAT CCCTATGGGG TTCAAATTGA AAGCCGGACC
AACATAGGAG CAAAGGTAAC AGTACATATT CCCGTTGATA GGAGCGAAAC AGATAATGTA
TAA
|
|---|
| Protein sequence | MLVNIIQYIR KTPLRYKITL AVVLLLLLSM SLIGFYFYWN MASVLTKNAN DNLVNLIQQA
NGNIENSFKI IDTTSLHFLS NKSMRSWTLD DTSFDGDFYS IFINKRHIEE DLKYSLMFNN
AWDMNLISTA YVFLNEDTYC SIFKSTPNIQ LINDNHINIF KRISGSKIRG KTMIPPSLND
KTIYFTRIVT NISNPKQRLV MIFGTEEEEF YKKYSELLSF EGSMVYITDE KGIIYSSSQR
DNLGNNVPSS ILNLRNDTGV SEVDIGNVTY LIAHRKISDT GLDFIAGIPK EQVLAKLSDS
MKNYIVITAI IVFISVFSGI IISLRFTRFV RDMLSVINRV KVGDYDVKMP YYKDNELKLV
SNTFNNMTYE IKYLINQVYE KQLLIKETEF KFLQSQMNPH FLFNTLITIG YKAKLSKDET
VYKMVTSLTE LLQAGIYSNS QAKIPIRQEL EFIDFYLYLQ KMRFGDKLEY KIYVSDESIL
NFVLPKLSIE PLIENAVVHG LEEKVGKGTI ELNIRRENES IFFVVTDDGA GFKTDKINLD
DNDTINMRKK GHNSIGLMNT HKRIKLMYGD PYGVQIESRT NIGAKVTVHI PVDRSETDNV
|
|---|
| |