| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_2943 |
|---|
| Symbol | |
|---|
| ID | 7312428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | - |
|---|
| Start bp | 3502987 |
|---|
| End bp | 3503454 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 643609843 |
|---|
| Product | toxin secretion/phage lysis holin |
|---|
| Protein accession | YP_002507217 |
|---|
| Protein GI | 220930308 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4824] Phage-related holin (Lysis protein) |
|---|
| TIGRFAM ID | [TIGR01593] toxin secretion/phage lysis holin |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0683792 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAATA TAAATGCAAT TAAAGCTTCG ATAGTTACGG TATTTGCAAC TATATCAGCT
TGTCTTGGTT GGTTTGGTTG GCTTGTAGTA ATATTTGTTG GAAGTCTTTT ATCTGATTGG
ATTACAGGAA CACTTGTAGC TTGTAAAAAC GGTCAATGGA GTAGTAAGGC AAGTAGAGAA
GGAATATGGC ATAAGTTCGG AAGTATTATA GCAGTATTAG TTGCTGCTGT TGTTGATATA
GTTATTGGTA TGGTCATTAA TAATATACCA AGTGTTACAT TACCTTTTAC ATATACAGTT
TTATTATGTC CTATTGTGTT AGTATGGTAT ATCGTAGGAG AGTTAGGCAG TATTATTGAA
AATGCAGGAC TTATGGGAGC ACCTGTTCCT AGTTTTCTAC AAAAAATGAT TGTAGCATTT
AAAAACACGG TTGATGACGC TGGGAATAAA ATAGTAGATA ATAAGTAG
|
|---|
| Protein sequence | MDNINAIKAS IVTVFATISA CLGWFGWLVV IFVGSLLSDW ITGTLVACKN GQWSSKASRE
GIWHKFGSII AVLVAAVVDI VIGMVINNIP SVTLPFTYTV LLCPIVLVWY IVGELGSIIE
NAGLMGAPVP SFLQKMIVAF KNTVDDAGNK IVDNK
|
|---|
| |