| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_2776 |
|---|
| Symbol | |
|---|
| ID | 7311403 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | - |
|---|
| Start bp | 3335468 |
|---|
| End bp | 3336979 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643609675 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_002507054 |
|---|
| Protein GI | 220930145 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGCA AAAGGCAAAA GAATCCTCGT GTTCATTCCC CAAAAAACAA TTCAGTTCGC
TTGGCCGGCT ATACAGAAGA CTTTACCTCC ATTAAAGATG CGTCAGTATC TCAAGCAGAC
CAGAGAGTGC TAACCCAATA TATAGCTGAT AATCAAAAAC TGTTCTTTGG ATCAAAGGAT
TGCTTCAGAG ATTTCAGTGA AGTTTTGCAG GAGGTACAGG AATACATCTC ATCTAAATAT
TCTACTCTTA TTATTGAAGG AGGAAAAGAT GAGGTCAAGG ATCAGATAAA AAGGTATATT
GCAAAATACC TTCAGGATTA TCGTATTGCT GTAAAGGGTA TGAGTGATCA GCAGCTGATA
GACAGTCTGT ATACTGAGAT GGCAGAGTTC AGCTTCCTTA CAAAGTACAT ATTTGGAACA
GGTATAGAAG AAGTAGATAT AAATGCTTGG AACGACATAG AAATCCAATA TTCAAATGGA
AGCACTGTTA AGCTGGAGGA GCATTTTGAC TCTCCGGAGC ATGCTGTTAA TGTTATTAGA
AGAATGCTTC ATGTGTCAGG CATGGTGCTG GATAATGCAA GCCCCGCAAT TCTAGGACAT
CTGAGCAAAA ATATCCGAAT TGCGGTACTT AAAACACCAC TTGTAGATGA GGATGTGGGT
GTTTCTGCTT CTATCCGTAT TGTTAATCCG CAAAGCATGG TAAAGCAGGA TTTTGTAGAC
GGAGGAACGG CAACAGACGA AATGCTGGAC TTTTTATCCG AGTGCCTTAG ATACGGAATA
TCTGTATGTG TGGCAGGTGC AACCTCGTCA GGTAAAACTA CGGTGGCAGG CTGGCTTCTC
ACTACCATAC CTGACAATAA AAGAATTTTT ACAATAGAAA ACGGCTCCCG TGAGCTGGCA
CTAGTACGTA AAAGGGATGG GAAGATAGTA AACAGCGTCA TACACACGCT GACAAGGAGC
AGTGACAATG AAAAGCAAAA TATTGATCAG GATATGCTGC TTGATATGGC ACTGAGATTT
AATCCCGAGA TTATATGTGT AGGGGAGATG CGCTCATCAG AGGCCTATAC GGCACAGGAA
TCTGCAAGAA CAGGACATAC CGTACTGACA ACAATACACA GCAACAGCTG TGAAGCCACA
TGGAGAAGAA TGGCTACACT TTGTAAAAGG AAATATGACA TTAATGATGA TACGCTTATG
GCACTTGTGA CAGAGGCATT TCCCATTGTG GTATTCACAA AGCAGCTTGA AAACAAGCAA
AGAAGGATGA TGGAAATAAA GGAGTGTGAG ATAAGAGCTG ACGGGATGCG ATGCTTCCGT
ACACTTTACC GCTTCAATAT TACAGAAAAC AGGATAGAGA ACGGTAAGCT ATTAATAAAC
GGACATCATA AAAAAGAGCA GCAGATATCC CAAAGCTTAC AAAAACGGTT TCTCGAGAAC
GGTATGCCTC AAGAGGTACT CAATCTTATA TTGAAAGGAC AGTATCCTGA TCCGAAGGGA
GTGAAATCAT GA
|
|---|
| Protein sequence | MKSKRQKNPR VHSPKNNSVR LAGYTEDFTS IKDASVSQAD QRVLTQYIAD NQKLFFGSKD
CFRDFSEVLQ EVQEYISSKY STLIIEGGKD EVKDQIKRYI AKYLQDYRIA VKGMSDQQLI
DSLYTEMAEF SFLTKYIFGT GIEEVDINAW NDIEIQYSNG STVKLEEHFD SPEHAVNVIR
RMLHVSGMVL DNASPAILGH LSKNIRIAVL KTPLVDEDVG VSASIRIVNP QSMVKQDFVD
GGTATDEMLD FLSECLRYGI SVCVAGATSS GKTTVAGWLL TTIPDNKRIF TIENGSRELA
LVRKRDGKIV NSVIHTLTRS SDNEKQNIDQ DMLLDMALRF NPEIICVGEM RSSEAYTAQE
SARTGHTVLT TIHSNSCEAT WRRMATLCKR KYDINDDTLM ALVTEAFPIV VFTKQLENKQ
RRMMEIKECE IRADGMRCFR TLYRFNITEN RIENGKLLIN GHHKKEQQIS QSLQKRFLEN
GMPQEVLNLI LKGQYPDPKG VKS
|
|---|
| |