| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_2458 |
|---|
| Symbol | |
|---|
| ID | 7311127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 2971590 |
|---|
| End bp | 2973356 |
|---|
| Gene Length | 1767 bp |
|---|
| Protein Length | 588 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643609388 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_002506767 |
|---|
| Protein GI | 220929858 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGT GGCTTATCAA ATCCCTAAGT GCTGCCATTA TCCTCAGTTT TACCGTAAGT
ATGGCAGCTT GTACCAAACC GGGTACCGAC AGCAGCTCGT CATCCGGTTC CGGCAGTTCT
ACATCCGGCA GTAACCCTTA TAAGGACACT GTGACTTTAG ATGTTTACAC AATGACAGGC
AATTTTCAGG GTGAACAGAT AGGATGGTTC GGAAAGGTAA TCAAGGACAA ATTTAATCTG
AAACTAAACA TTATTTCTGC TCAGACAGAC GGGAATGCCG ATCAGTCCTT TCAGACACGT
TCTGCTTCCG GAGACCTCGG TGATATCGTG GTATATGGTG CCATAGATAC AAAATTCACC
GATTCTTTAA AGGCGGGTCT TTTAATGAAG CTGTCTGATA ATGATTTGCT GGCAAAGCAC
GGAGATAACA TTGTAAAGAA TTTTTCAGGT GCTATTAAGC GTATTTCCGC TAAATACGGC
GATTATGCAA TTCCCAATAA TGTATCTAAC GAGTCTCCCA TTACTCCTTC CGAGGATTCT
GACCTTACAT TTGGTGTATA CACCCGTTAC GATTACTATC AGGAAATCGG TTCTCCTAAG
CTTAATAGCT TCGATGATGT ATATCCGATG TTAAAAGCAA TGGCAAAAAA GCATCCTACC
AACTCAAATG GTCAGAAGCA GTATGCTTTT TCACTGTTTA AAGATTGGGA CGGCTGCATG
ATGATGTTCG GTAAAATGAT TGCAGAGCTT TACGGCTATG AGGAAGCTCC CTTCGGCGGT
TTCCTGCTGA CAAACAATAT GGCTACCGAG TATCAGAGTA TTATTGATCC GGACGGTTAC
TATGTCAAGG CTCTTAAAGT TTATAATCAA GCATACCGTG ACGGTTTGCT TGACCCAGAT
TCAATCAATC AGACCTGGGA TGATATTACC AAAAAGTATG CAAACGGTCA GGTTCTGTAT
TCCCAATTCA GCTGGCTTGG CCCTAACAAT TTTAACAATG CTGACAACAT ATCAAAGGGT
GTAGGCTTTG CCCTTGTTCC TATAGCTGAT GAGAAAATCT GGTCAAATGG ATTTACTCCA
AACGGCAGCA CCTACCTTGT AGCTCTTGGT AAATCCTGTA AGAACCCCGA ACGTGCCATG
GATTTCTTAA ATTGGTACTA TTCATCTGAA GGTGAAATGA TAATAAAGAA CGGCCCTGAA
GGTCTTGCAT GGAGAATAGA AAATGGCAAA CCAACATTAA CTGATTTTGG TAGAAAATGT
ATGCCATCCA TTGCAGTTGA AGTATCTAGT GAGTTTGGTG GCAGTGATTG GCAGACAGGG
GAGTGTAAAG TCGGCTTTGA CGGCTTAGCA GCAAACTCTA TAAATCCAAA TACCAAAGAG
CCATACTATT ACAAGCTTTG GTCGTCGACC CTGTCATCCA ACACAAGTAC CCTTCAGAAA
AACTGGAGTG CAGCGATGGA CGATGCTCTG TCCACCAAAG ACTGGCTTAT GAAGAATAAC
CATGTTTCAG TTTCTCCCGG CACTGATTAT GTTGGACCTA CCCTTCCTTC CGATATTCAA
TCAACTCAGG ATGTTGTTAA AATGGATATT CGTGATTATT CCTGGAAAAT GGTTTATGCC
AAGAACGATA GTGAATTTAA TTCTCTTCTT AAGCAAATGA CTGAGAAGGT AAAAGGCGAA
GGTTATGACA CCGTTGTTGA ATGGAATAAA CAGCAGTTGG CTGAACTTTC TGCGGCCCGC
AAGCAGGCTG CAGAAAACAG CAAATAA
|
|---|
| Protein sequence | MKKWLIKSLS AAIILSFTVS MAACTKPGTD SSSSSGSGSS TSGSNPYKDT VTLDVYTMTG
NFQGEQIGWF GKVIKDKFNL KLNIISAQTD GNADQSFQTR SASGDLGDIV VYGAIDTKFT
DSLKAGLLMK LSDNDLLAKH GDNIVKNFSG AIKRISAKYG DYAIPNNVSN ESPITPSEDS
DLTFGVYTRY DYYQEIGSPK LNSFDDVYPM LKAMAKKHPT NSNGQKQYAF SLFKDWDGCM
MMFGKMIAEL YGYEEAPFGG FLLTNNMATE YQSIIDPDGY YVKALKVYNQ AYRDGLLDPD
SINQTWDDIT KKYANGQVLY SQFSWLGPNN FNNADNISKG VGFALVPIAD EKIWSNGFTP
NGSTYLVALG KSCKNPERAM DFLNWYYSSE GEMIIKNGPE GLAWRIENGK PTLTDFGRKC
MPSIAVEVSS EFGGSDWQTG ECKVGFDGLA ANSINPNTKE PYYYKLWSST LSSNTSTLQK
NWSAAMDDAL STKDWLMKNN HVSVSPGTDY VGPTLPSDIQ STQDVVKMDI RDYSWKMVYA
KNDSEFNSLL KQMTEKVKGE GYDTVVEWNK QQLAELSAAR KQAAENSK
|
|---|
| |