Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ccel_2247 |
Symbol | |
ID | 7310930 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium cellulolyticum H10 |
Kingdom | Bacteria |
Replicon accession | NC_011898 |
Strand | - |
Start bp | 2623924 |
End bp | 2626290 |
Gene Length | 2367 bp |
Protein Length | 788 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 643609178 |
Product | ribonuclease R |
Protein accession | YP_002506568 |
Protein GI | 220929659 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.165281 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGATT TGGAAGAACG GAAAGAACGA ATAGTTGCAT TTATGAGGGA TAAAGCATAC AAACCTCTTT TATTTAAGGA ACTTAGAATG GTTCTTGACG TGCCGGAAGA GGATATAGAG CTTTTTACTC AGGTGATGGA TGAGCTTGAG GAAGAGGGCA GAGTTTTTAA GACCCATGGA AAAAGGTATG GCGTACCTTC AAGGTTAAAT TTGGTCACAG GAAGGATTCA AGGACATGAA AGAGGATATG GATTCCTCAT ACCTGATGAT GAGCTTATGG AGGATGTATT TATCCCCGCA GACAGCCTTA ACGGAGCCAT GCATAATGAC AGAGTTGTTG CACGGGTAAA TAAGAAAAGT TCTTCTGACA GAAAAATGGA AGGCGAGATA ATCCGTATTC TTAAAAGGGC TAATACCACT TTGGTAGGAA CCTTTGAAAA CAGTATGAGC TTTGGTTTTG TTGTTCCCGA TAATAAGAGG ATTTCAGGAG ACATTTTTGT TTCAAAAAGT GAGTTTCACG GTGCCAAAAA AGGACAAAAA GTTGTAGTTG AGATACTAAA ATACCCGGAG GCCAGAAGAA ATGCTGAGGG TAGAGTAATC GAAATAATAG GCGACAGGAA CGAAACGGGT GTCGATATAC TGTCCATTAT AAAATCGTAT AATCTCGAAG AGGATTTTCC TGAGGATGTT CTCAATCAGG CGAATTCCAT AGGTGATACC GTAACAGAAG AAATGATACA AGGACGACGA GATTTAAGGG GACTTCGCAT GGTTACCATA GACGGAGAAG ATGCAAAAGA CCTTGATGAT GCGGTTTCAA TTGAAACACT CGAAAACGGG AATTACAGGC TTGGTGTTCA CATTGCAGAT GTAACAAACT ATGTTACGGA AAATTCACCC CTTGATTTGG AAGCACTTGA CAGAGGAACA AGTGTGTATC TGGTTGACAG AGTTATACCC ATGCTCCCAA GAAAACTGTC TAACGGTATA TGCAGTCTGA ATCCGCATGT GGACAGGCTG AGTTTTAGTG TAATGATTGA CATAGATAAA AACGGTAAGG CATATAACCA CGAAATATTT GAGAGTGTAA TCAATATAGA TGAGAGGATG ACATACACTA ACGTTTATAA AATATTGGAG GAAAATGACC AAGAACTTAT AAAACGTTAC AGCCACGTCG TTTCTGACTT TCAAAAAATG AAAGAACTGG CACTGATACT TAGAAAGAAA AGATTTCAGA GAGGTGCTAT TGATTTTGAC TTTGATGAAG CGAGGGTAGT TATTGATGAA AAGGGCAAGC CTATTGACGT TAAAAGATAT GAAATAACCA TAGCAAATCA GATAATAGAA GAATTCATGC TTGCTTGTAA TGAAACCGTT GCGGAGCATT TTTTCTGGAC CAATACTCCC TTTGTCTATA GAATACACGA GGACCCTGAC GAGGAAAAAA TTCACAACCT TAACGAATTC CTGTACAATC TGGGATATAG TATAAAGGGG ATAAATAAAA TACACCCTAG AGCCTTGCAG GACCTATTGG AAAAGGTAAA AGGAACAAGG CATGAGCGAA TTATTAGTAC AGCTATGCTC AGGTCACTGC AAAAAGCCCG ATATAGCAAT GAAAGTACAG GCCACTTTGG ATTGGCTGCA AAATATTATT GCCACTTTAC ATCACCCATA AGAAGATATC CTGATTTGAT AATTCACAGG ATAATGAAGC TTTACCTCAA AGGAGGTATG AGTGAGGAGA AAATCAATCA CTTGGAAGGA ATACTGCCGG AGATAGCAAA GCAGTGTTCA GAACGCGAAA GAGCCGCAGA CGAAGCGGAA AGAGAAAGTG AAGACCTCAA AAAGGTAGAA TATATGAAAG CTCATGAGGG AGAAATATTT GAAGGTATTA TCGCAAATGT AACTTCCTTT GGAATGTTTA TAGAACTTGA TAACACAATA GAAGGTCTTG TTAGAATGAG CAGCATGGAA GATGACTACT ATAACTATAA TGAGAGTCAT TATTGCTTGG TGGGTGAACG TACACGCAAG ATATACAGAA TAGGTGACTC TGTAAAGGTT ATTCTTGCAA AAGCTGACGT AGCTGCCAGA AAAATAGAGT TCATACTGGT TGAATCTGAT GATGAGGATG ATTTTGACAA TATAGACCAG GAAACAGAAG ATGAATTGAT ATTTACAAAG AACAAAAGTA GGAAATCATC TATTAAGAAA AATAGTCAGA GTACAAAGGC AGTTAAAGCA GATGATAAGG GCGGAAGGAA CTCTGCTTCT GATAATAAGT CCGGCAAAAA AGGAAAAATC ATTGATAAAA AAGTATATGA AAAAATAATG GGAAAAAGAA AAAGGAAGAA AAGGTAG
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Protein sequence | MADLEERKER IVAFMRDKAY KPLLFKELRM VLDVPEEDIE LFTQVMDELE EEGRVFKTHG KRYGVPSRLN LVTGRIQGHE RGYGFLIPDD ELMEDVFIPA DSLNGAMHND RVVARVNKKS SSDRKMEGEI IRILKRANTT LVGTFENSMS FGFVVPDNKR ISGDIFVSKS EFHGAKKGQK VVVEILKYPE ARRNAEGRVI EIIGDRNETG VDILSIIKSY NLEEDFPEDV LNQANSIGDT VTEEMIQGRR DLRGLRMVTI DGEDAKDLDD AVSIETLENG NYRLGVHIAD VTNYVTENSP LDLEALDRGT SVYLVDRVIP MLPRKLSNGI CSLNPHVDRL SFSVMIDIDK NGKAYNHEIF ESVINIDERM TYTNVYKILE ENDQELIKRY SHVVSDFQKM KELALILRKK RFQRGAIDFD FDEARVVIDE KGKPIDVKRY EITIANQIIE EFMLACNETV AEHFFWTNTP FVYRIHEDPD EEKIHNLNEF LYNLGYSIKG INKIHPRALQ DLLEKVKGTR HERIISTAML RSLQKARYSN ESTGHFGLAA KYYCHFTSPI RRYPDLIIHR IMKLYLKGGM SEEKINHLEG ILPEIAKQCS ERERAADEAE RESEDLKKVE YMKAHEGEIF EGIIANVTSF GMFIELDNTI EGLVRMSSME DDYYNYNESH YCLVGERTRK IYRIGDSVKV ILAKADVAAR KIEFILVESD DEDDFDNIDQ ETEDELIFTK NKSRKSSIKK NSQSTKAVKA DDKGGRNSAS DNKSGKKGKI IDKKVYEKIM GKRKRKKR
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