| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_2188 |
|---|
| Symbol | |
|---|
| ID | 7310877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 2560995 |
|---|
| End bp | 2562644 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643609120 |
|---|
| Product | Peptidoglycan-binding domain 1 protein |
|---|
| Protein accession | YP_002506510 |
|---|
| Protein GI | 220929601 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTAA AGAAGATAAA AAGCCTAATA AAGGATATCC CAAAGAAAAT TAAAAATTAT
AAAAGTAAAT ACCCGTCAAA ATATAAATAT ATAATTATTT CATTTTCAGG AACAGCAGCC
CTTGCTCTTA CAGTAGCAAT TGCTTCATCC CTACCTCCCT CAAACTCGGA TTTTGTTGCT
TCCGGTAAAC AGGAAAGTAC AGCTTCCGTA TCCAACCAGA CAAATATTCA AAAGTATTCC
AAAAGTTCTT CTGAATCAAC AGCGTTTAAT AAAACATCCC GTGGAAAAGT TCCTTTGAAT
CCTTTAAAAG GTGATATTAT AACGCTAGGG GTTAAAGACA TTACAGTCAC TGTTATTCAA
AAAAGACTTA TGGAGCTGGA TTACCTTGAA ATAGACGAAC CTACCGATGA ATTCGGAGAA
CCGCTTCAAT TCGCAATAGA ATTATTTCAG CGTAAAAATA AGTTACCCAT AACAGGTGAG
GTTGATGCCA AAACATATGA GCTTTTGCTT TCAGAGGATG CAAAAGCATA CACCGTTTCT
CTCGAAGCTG AAGGAACAGA TGTACAACAG CTTCAGGAAC GTTTGTATGA ATTAGGGTAC
ATAAACAAGG TAACAGGATA TTTTGGTTCC GACACCGACA CTGCTGTAAA AGAGTTCCAG
AAAAGAAACG GACTTTATGA TGATGGTAAT GTAGGTAAAC AGACAAGAGA AATTATGTAT
TCGGCTAATG CAGTTCCAAT GTCCTTTTAT TTAGGTGACG AAAACGGAGA AATACTTCAA
TACAAGCAGA GATTATATGA ACTTGGATAT CTGACTGCAA AACCCAGCGG AAAGTATAAC
AATGATACGG TTCTTGCAGT CAAGCGTTTT CAGGAAAACA ATGGTTTGAT TTCCGACGGT
TACATAGGTC CCGTTACAAA GGATTTGCTT ATGTCGGCAG ACGCTACAGA AAATGCCCTT
GATATAGGTG ATAACGGAGA AGACGTTACA AAGGTTCAGA CATACTTGAT GAAACTGGGA
TATCTGAAAG GTGTAACAGG GTATTTCGGA TCTGACACAC ACAATGCTGT TCTTAAATTT
CAATCAAGAA ATGGTTTAGG ACAGGACGGA AAAGTAGGTT CACAAACTAT AGCAAAACTT
TTATCATCTG ATGCAAGAAA GTGGACCGGC GGTTCGAATG GCGGGTCAAA CAGTAATAGT
TCAGGAGGAT CAAGCAATTC CGGCGGAGGT AGTAATTCTA GCGGAGGTAG TAATTCCGGC
GGAGGAAACG GAGGAAGTTT CGTAAGTCCA AGTGTTGAGC GACTTATTTC CGTAGCCAGA
TCAAAGTTGG GAAGCAGATA TATATATGGT GCAAAAGGGC CTAATACCTT CGATTGCTCT
GGATTTGTTT ACTGGGTATT AAAAAATTCA GGGGTCAGAC AAGGTTATAT GACCTCAGGA
GGATGGGCCG GAAATAGCAG ATATAGAAGG ATATCCAGTA TGAGTAGTAT AAAACGCGGA
GATATTATAA CATACAACGG GCATGTAGGT ATCGCATTAG GAGGCAACCA GATGATTGAT
GCATCATCAA GTCAAGGCAG AGTTCGTATA ACCAACATAA CTTCTTCCTA CTGGAAAAGA
AATTTTATTT GTGCATACAG AATATTCTAA
|
|---|
| Protein sequence | MSLKKIKSLI KDIPKKIKNY KSKYPSKYKY IIISFSGTAA LALTVAIASS LPPSNSDFVA
SGKQESTASV SNQTNIQKYS KSSSESTAFN KTSRGKVPLN PLKGDIITLG VKDITVTVIQ
KRLMELDYLE IDEPTDEFGE PLQFAIELFQ RKNKLPITGE VDAKTYELLL SEDAKAYTVS
LEAEGTDVQQ LQERLYELGY INKVTGYFGS DTDTAVKEFQ KRNGLYDDGN VGKQTREIMY
SANAVPMSFY LGDENGEILQ YKQRLYELGY LTAKPSGKYN NDTVLAVKRF QENNGLISDG
YIGPVTKDLL MSADATENAL DIGDNGEDVT KVQTYLMKLG YLKGVTGYFG SDTHNAVLKF
QSRNGLGQDG KVGSQTIAKL LSSDARKWTG GSNGGSNSNS SGGSSNSGGG SNSSGGSNSG
GGNGGSFVSP SVERLISVAR SKLGSRYIYG AKGPNTFDCS GFVYWVLKNS GVRQGYMTSG
GWAGNSRYRR ISSMSSIKRG DIITYNGHVG IALGGNQMID ASSSQGRVRI TNITSSYWKR
NFICAYRIF
|
|---|
| |