Gene Ccel_1939 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCcel_1939 
Symbol 
ID7310654 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium cellulolyticum H10 
KingdomBacteria 
Replicon accessionNC_011898 
Strand- 
Start bp2288991 
End bp2289536 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content37% 
IMG OID643608873 
Product2'-5' RNA ligase 
Protein accessionYP_002506267 
Protein GI220929358 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.33767 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAGTAT TTTTTGCCAT TGAGTTTGAC GATGACATAA AAACATATTT GTCCGAAATT 
CAGCAGAAGG TCCGACAGCA TTGTACTTCA GGGAATTTTA CACTAAAAGA AAATTTTCAT 
CTGACTTTAA GATTCATAGG TGAACAAAAT ACCGACCATG TTCAAAATCT AAAGCAGGTC 
TTAAAAGATG CAGCCCAGTT TCAAGGGTTT GAGCTCATAC TGGATAAACC GGGAATTTTC 
AGAAAGGGGA ACAGAGGTAT AATATGGCTT GGAATAGAGA AAAGTTTACA GCTTCAACAG 
CTTTACAATA ATATGGAAGA CCTACTGTCA CAAAAAGGAT ATCAAAAAGA AGAAAGAAGT 
TATAATCCTC ACATAACCCT GGCGAGGGAA GTAAAAACAG AGGATTTTGG CTTTCTGACA 
GAAAAAATAG AAATTGACAA GCTTACTATG AAAGTTAAAT CAATTTCCCT GATGGAAAGT 
AAGCGTATCA ACGATAAATT GGCCTATATT CCTCTTGAGC GGGCGGAACT GACGGATAAC 
CGATAG
 
Protein sequence
MRVFFAIEFD DDIKTYLSEI QQKVRQHCTS GNFTLKENFH LTLRFIGEQN TDHVQNLKQV 
LKDAAQFQGF ELILDKPGIF RKGNRGIIWL GIEKSLQLQQ LYNNMEDLLS QKGYQKEERS 
YNPHITLARE VKTEDFGFLT EKIEIDKLTM KVKSISLMES KRINDKLAYI PLERAELTDN 
R