Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ccel_1900 |
Symbol | |
ID | 7310622 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium cellulolyticum H10 |
Kingdom | Bacteria |
Replicon accession | NC_011898 |
Strand | - |
Start bp | 2256319 |
End bp | 2258190 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643608834 |
Product | deoxyxylulose-5-phosphate synthase |
Protein accession | YP_002506228 |
Protein GI | 220929319 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00488607 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGGGTATT TAGATAGCAT AAAATTTCCT GAGGATATAG GTAAATTAGA GCTTGAACAG TTAAAAGTTC TTGCTGAAGA AATCAGGACA TTTCTTATAT ATAAAGTTTC GAAAACCGGG GGGCATTTAG CCTCAAATCT TGGTATAGTT GAATTGACAC TTGCCATTCA TAGTAACTTT AATACTAATA AGGACAGGAT TGTTTGGGAC GTAGGCCATC AATCATATGT CCATAAGATA CTGACAGGCC GAAAGGCGGA TTTTGATACC TTACGTAAAT TGGGAGGGTT GGCCGGGTTT CCTAAAACCT GCGAAAGCTT GCACGACTGT TTTAATACGG GACACAGCAG TACATCTATT TCTGCTGCGT TGGGTATTGC CCGTGCAAGG GATATAAAAA AGGAAGATTA CAGTGTTATG GCTGTAATAG GCGATGGAGC TATGACGGGC GGAATGGCCT ATGAAGCCTT AAATGATGCC GGAAGACTGG CAAGTAACTT TATTGTGGTG CTTAATGACA ATGAGATGTC CATAGCACAG AACGTGGGAG GTATGTCCAG ATATCTGAGC AAACTTCGTA CAGATCCTTT TTATACAAAA ACTAAAGAGG ACATTGATAA TTTTCTTGAC AAGATGCCAA ATATTGGTAC TAAAACACGT AGGGCTGTCC GAAAATTGAA AAGCACAGTA AAATATTTGA TTACACCCGG AATGTTTTTT GAACAGCTGG GTTATAGATA TTATGGGCCT GTAGATGGCC ATAATCTGGA TGAATTGAAT AAAGCATTAC AGGCAGCCAA AAAAATAAAA GGTCCCGTAC TTATTCACGT TTGCACTCAG AAGGGAAAGG GTTATTCCTA TGCAGAAGAA AGTCCGGACA GATTCCATGG AATAGCACCA TTTGAGATAG AGACAGGTGA AACGTACGGT AAGAGGCTGC CTGACTATTC CGAGGTCTTT GGGGAAGCTG TTCTGGAGGC TGCCGAAAAG AATAACAGAG TTGTCGCCAT ATCGGCAGCA ATGACAAAGG GGACCGGGTT AGCCAAATTT AGTACAACGT TTCCTAGAAG GTTTTTTGAT GTGGGAATAG CTGAACAACA CGCAGTTACA TCTGCGGCCG GAATGGCTAT AAATGGTATA ATACCTGTTG TTGCCATTTA TTCCTCTTTT TTACAAAGAG CCTATGATCA GTTGATACAC GATGTAGCAC TACAAAAACT ACATGTAGTT ATAGGTGTAG ACAGAGCAGG GATTGTAGGT GAGGATGGAG AGACACATCA GGGAGAATTT GATATATCAT TTCTGAACCA TATACCTGAC TTTACAATAA TGGCCCCTGC TGATTATTAT GAGCTCAGGG AAATGGTTAA TTATGCCATA AATATTCATA CCGGGCCTAT AGCAATAAGG TATCCAAGAG GCAGAGGTAA GGAAATTATC AAACATGAAG TACCTTTAGT TAATGGAAAA GGGGCAGTGC TGAAAGAGGG GCAGGATGTC TGTATACTTG CTGTGGGCAG AATGGTTGAA ACAGCTTTTA AGGTATCTGA AAAGTTAAAA GAGAAGGGTA TAAATGCAGG AGTTGTCAGT GCAAGGTTTA TAAAGCCACT AGATGTAGAA TTAATTACGG AATGTGCAAA TAAATATAAA AACATTGTAA CAATGGAAGA AAATTGTGTT ATAGGAGGGT TTGGAAGCAG AGTTCTGGAT ACCTTGAACA GACTTGATTT AAAGGCACGT ATCCTCATAA AGGGCCTACC CGAACAGTTC ATACCACAAG GTTCCAGAGA AGAGTTAATA AAAAAACTCA AACTAGATGC AGACTCAGTA ACAAATGATA TAATATATAT GTTAGAAAAT ACCAAGCTAT AA
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Protein sequence | MGYLDSIKFP EDIGKLELEQ LKVLAEEIRT FLIYKVSKTG GHLASNLGIV ELTLAIHSNF NTNKDRIVWD VGHQSYVHKI LTGRKADFDT LRKLGGLAGF PKTCESLHDC FNTGHSSTSI SAALGIARAR DIKKEDYSVM AVIGDGAMTG GMAYEALNDA GRLASNFIVV LNDNEMSIAQ NVGGMSRYLS KLRTDPFYTK TKEDIDNFLD KMPNIGTKTR RAVRKLKSTV KYLITPGMFF EQLGYRYYGP VDGHNLDELN KALQAAKKIK GPVLIHVCTQ KGKGYSYAEE SPDRFHGIAP FEIETGETYG KRLPDYSEVF GEAVLEAAEK NNRVVAISAA MTKGTGLAKF STTFPRRFFD VGIAEQHAVT SAAGMAINGI IPVVAIYSSF LQRAYDQLIH DVALQKLHVV IGVDRAGIVG EDGETHQGEF DISFLNHIPD FTIMAPADYY ELREMVNYAI NIHTGPIAIR YPRGRGKEII KHEVPLVNGK GAVLKEGQDV CILAVGRMVE TAFKVSEKLK EKGINAGVVS ARFIKPLDVE LITECANKYK NIVTMEENCV IGGFGSRVLD TLNRLDLKAR ILIKGLPEQF IPQGSREELI KKLKLDADSV TNDIIYMLEN TKL
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