| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_1551 |
|---|
| Symbol | |
|---|
| ID | 7310315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | - |
|---|
| Start bp | 1900747 |
|---|
| End bp | 1902498 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643608480 |
|---|
| Product | glycoside hydrolase family 26 |
|---|
| Protein accession | YP_002505883 |
|---|
| Protein GI | 220928974 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4124] Beta-mannanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000398696 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TTTTTGGCAG AGTTTTGTCT CTGCTGACAG GGGTTGCACT GGGATGTACT
ATTCTTACAA CCGTGCCTGC TCCGGTTCAG GCTGCATATT CGCTTCCTGT AAATGTTGAA
GCTGAAGCTT GCAGCCTCGG TAATGGTGCT ACGGTTGCTA CCAACGTTTA TGGAACTGAA
TATCCAGGGT ATTCAGGTGA CGGATTTGTA TGGGCATCCA ATTCAGGAAC AATAACTTTG
GAGGTTACAG TTCCTACAAA TGCTATGTAT GAGCTTTCAA CACGCTGTTG GATGTATCTG
GGCAATCAGG GTGACTCCAG ACTTCAGGTT GTAAGCATCA ATGGCGTACC TCAAGGCAAC
TTCTATATTC CAAACAAAGG CGGATGGATG GATTACAGTT TTGGATTCTT CTACCTTGAA
GCAGGTACAA CCAAAATTGA GATAGGATCA TCCGGGAGCT GGGGCTTTAT ACTGTATGAT
AAAATATCAT TTGACTATGC AGATATGCCT GATCTCAACA TTGAACCAAC ATTATGTGAT
CCAAAGGCAA CCCTAGAAAC AAAGTCTCTC ATGAAGTATC TAACAAGCGT TTATGGAAAT
CATGTTATTT CAGGACAACA GGAGATTTAT GGAAGCGGTA ATGACGGAGA CTACGAACTT
GAATTTAACT ACATATATGA TAAGACAGGC AAATATCCTG CAATCAGAGG CTTTGACCTG
ATGAACTACA ACCCTCTGTA CGGATGGGAA GATGGTACAA CAGAACGCAT GATACAGTGG
GTAAAAGAAA AAGGTGGAAT TGCAACAGCC TGTTGGCATA TCAATGTACC GGCAGATTTC
ACAAGCTATA AGCTCGGTGA TAAACTGGAT TGGACAAAAT GCACTTATAA ACCTACTTCC
AGCTTCAATA CAGCCAACTG TCTTGATAAA ACAACAAAAG AATACGCATA CCTGATGCTT
GCAATCGATG AGATGGCAAA GCAGCTCCTT ATACTCCAGG ATGCTAAGGT ACCTGTACTT
CTTAGACCTT TCCATGAAGC AGAAGGCAAT AACAACACTG ACGGCTCTGG TGCTTGGTTC
TGGTGGGGTT CCGCAGGTTC AGATGTTTAT AAAGAACTAT GGAAGCTTCT GTATACAACA
TTGACAGAAA AATATGGTAT TCATAATGTA ATATGGGAAG TAAACCTTTA TACATATGCA
AATTCCCTCG AATGGTATCC GGGTGATAAA TATGTAGATA TCGTTGCTTA TGATAAGTAC
GAAGGATCAC CTTACACGTG GAAGACAAGT GCTGCATCAA CAGCATTTCT GACACTTGTA
AATGACACAA ACGATACAAA AATGGTTGCG ATGACTGAAA ATGACGTTAT ACCCGACATT
CAGAACATAG TAAACGAAGG TGCTTGGTGG CTGTATTTCT GCCCGTGGTA CGGTGATTTT
ATAACCAGTT CAAGATATAA TGACCCGGTA CTGCTAAACA CTATTTACAA CAGTGAGTAT
GTGGTAACTC TGGACGAACT CCCCAAAGAT ATCTACGGTT CTGCACCTTC AGACGAAGTG
GCAGGGGATT TGAATTCTGA CGGAAATTTT GATGCTATAG ATTTTGGCCT TTTGAAATCG
TACTTGCTGC TTAATACTCC GATAAACCTG ACAACCGCAG ATGTAGACGG CAACGGACAA
GTAAACGCTT TGGACTTTTC ATATATGAAG CAAAAGCTTC TTGGTAAAAT TGATAAATTC
CCAATAGAAT AA
|
|---|
| Protein sequence | MKKIFGRVLS LLTGVALGCT ILTTVPAPVQ AAYSLPVNVE AEACSLGNGA TVATNVYGTE
YPGYSGDGFV WASNSGTITL EVTVPTNAMY ELSTRCWMYL GNQGDSRLQV VSINGVPQGN
FYIPNKGGWM DYSFGFFYLE AGTTKIEIGS SGSWGFILYD KISFDYADMP DLNIEPTLCD
PKATLETKSL MKYLTSVYGN HVISGQQEIY GSGNDGDYEL EFNYIYDKTG KYPAIRGFDL
MNYNPLYGWE DGTTERMIQW VKEKGGIATA CWHINVPADF TSYKLGDKLD WTKCTYKPTS
SFNTANCLDK TTKEYAYLML AIDEMAKQLL ILQDAKVPVL LRPFHEAEGN NNTDGSGAWF
WWGSAGSDVY KELWKLLYTT LTEKYGIHNV IWEVNLYTYA NSLEWYPGDK YVDIVAYDKY
EGSPYTWKTS AASTAFLTLV NDTNDTKMVA MTENDVIPDI QNIVNEGAWW LYFCPWYGDF
ITSSRYNDPV LLNTIYNSEY VVTLDELPKD IYGSAPSDEV AGDLNSDGNF DAIDFGLLKS
YLLLNTPINL TTADVDGNGQ VNALDFSYMK QKLLGKIDKF PIE
|
|---|
| |