Gene Ccel_0787 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCcel_0787 
Symbol 
ID7309640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium cellulolyticum H10 
KingdomBacteria 
Replicon accessionNC_011898 
Strand
Start bp909298 
End bp910245 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content36% 
IMG OID643607729 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_002505145 
Protein GI220928236 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0028961 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATAGAAA TAGAAAAGCC TAGAATTGAA TGTGTATCAA ATAGCGATGA TAACACTTAT 
GGCAAGTTTA TAGTTGAGCC TTTAGAAAGA GGCTATGGTA TTACACTTGG TAATTCTTTA
AGAAGAATAT TGCTTTCTTC TTTACCCGGT TCTGCTGTCA ATTCAATAAA GATTGATGGA
GTACTGCATG AATTCTCTAC AGTTCCAGGT GTAGTAGAAG ACGTTACTGA GATAATACTT
AATATCAAAT CTCTTTCATT ATTAGTTCAT GGCGAAGGAT CAAAAGTTAT TTATATCGAT
GCAAATGGAG AAGGGCCAAT AACAGCTGGT GATATTATCA CTGACCAAGA TGTAGAAATA
TTAAATCCTG ACCTTCATAT TGCAACATTG AATGGCGATC ATAGATTCTA CATGGAGATG
GTAATTAGTA AAGGACGAGG ATATGTTTCT GCTGATAAGA ATAAACAGGC TGGTCAACCA
ATAGGTGTGA TTCCTGTTGA TTCAATATAT ACTCCCGTCA AAAAAGTAAA TTACACTGTT
GAAAATACAC GTGTTGGTCA GATTACTGAT TATGATAAGC TGACACTTGA AGTTTGGACT
GACGGAAGTA TTAATCCTGA CGAAGCTATA AGTCTTGGAG CTAAAATACT TAGCGAGCAT
TTAAATCTGT TTGTAGATTT GTCTGATCAG GCTAAGCATA CTGAGATTAT GGTTGAAAAG
GAAGAAACCA AAAAAGAGAA AGTTCTTGAA ATGACTATTG AGGAGCTTGA TTTGTCAGTT
AGATCATATA ACTGCTTAAA GAGAGCAGGA ATCAATACCG TAGAGGACCT TACCAACAGA
ACCGAAGAGG ATATGATGAA GGTAAGAAAT CTTGGAAGAA AGTCTCTTGA AGAGGTTCTT
CAAAAACTTC AGGCACTTGG GTTGTTCTTG GCACCAAGTG AAGAATAA
 
Protein sequence
MIEIEKPRIE CVSNSDDNTY GKFIVEPLER GYGITLGNSL RRILLSSLPG SAVNSIKIDG 
VLHEFSTVPG VVEDVTEIIL NIKSLSLLVH GEGSKVIYID ANGEGPITAG DIITDQDVEI
LNPDLHIATL NGDHRFYMEM VISKGRGYVS ADKNKQAGQP IGVIPVDSIY TPVKKVNYTV
ENTRVGQITD YDKLTLEVWT DGSINPDEAI SLGAKILSEH LNLFVDLSDQ AKHTEIMVEK
EETKKEKVLE MTIEELDLSV RSYNCLKRAG INTVEDLTNR TEEDMMKVRN LGRKSLEEVL
QKLQALGLFL APSEE