| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_0541 |
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| Symbol | |
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| ID | 7309413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium cellulolyticum H10 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011898 |
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| Strand | + |
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| Start bp | 627725 |
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| End bp | 628804 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643607475 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_002504903 |
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| Protein GI | 220927994 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000181279 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAACATA GTCAAGAAAG TAGAAAAGCA TTACTGAAAG AATTGATAGA CAGAGGCAAA
CAAAAAGGAA TGCTAACCTA CAAAGAGATT ATGGATGCCT TTGAGGAAAT CGAGCTTGAG
CCGGAGCACA TTGAAAAAAT ATATGAAACA CTTGAAACCA TGGGCGTTGA TGTTATCGGA
GACATAGACT CCGAAATGGA AGAGATTCAG CTTACGGACG AGGAACTTGA TATTAGTGTT
CCAGAAGGTG TAAGTATAGA TGATCCAGTA CGTATGTACC TTAAAGAAAT CGGTAAGGTC
CCCCTTTTAA CAGCAGATGA GGAAATTGAC CTTGCCCATA GAATGGAAAA CGGTGATATA
GAAGCAAAAA GGAGATTAGC CGAGGCGAAC TTAAGGCTGG TTGTTAGTAT AGCAAAAAGG
TATGTTGGTA GGGGAATGCA GTTCCTTGAC TTGATTCAGG AAGGGAATCT CGGATTAATT
AAAGCAGTTG AAAAATTTGA TTATAGAAGA GGTTTCAAAT TCAGTACCTA CGCAACTTGG
TGGATAAGAC AAGCTATCAC AAGGGCAATT GCCGATCAGG CCAGAACTAT ACGTATCCCT
GTTCATATGG TGGAAACTAT CAATAAATTA ATCAGGGTAT CAAGGCAATT GTTGCAGGAA
TTAGGAAGAG AACCACAACC TGATGAAATT GCAAAAGAGA TTGGTATGTC TGTAGATAAA
GTTCGTGAAA TAATGAAGAT TTCACAAGAG CCCGTATCAC TTGAAACTCC TATTGGAGAA
GAGGAAGACA GCCATCTAGG TGACTTTATT CCGGACGATG ATGCTCCCGC TCCGGCTGAA
GCGGCTGCAT TTACGTTACT TAAAGAACAG CTTATTGATG TACTTGATAC TTTAACTCCA
CGTGAAGAGA AGGTTTTGAG GCTAAGATTC GGTTTAGATG ACGGAAGAGC CAGAACTCTT
GAGGAAGTGG GCAAGGAGTT TAACGTAACC AGAGAACGAA TACGCCAAAT AGAAGCAAAG
GCGTTAAGAA AACTGAGGCA TCCAAGTAGA AGTAAAAAGT TAAAGGATTA TTTAGACTGA
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| Protein sequence | MKHSQESRKA LLKELIDRGK QKGMLTYKEI MDAFEEIELE PEHIEKIYET LETMGVDVIG
DIDSEMEEIQ LTDEELDISV PEGVSIDDPV RMYLKEIGKV PLLTADEEID LAHRMENGDI
EAKRRLAEAN LRLVVSIAKR YVGRGMQFLD LIQEGNLGLI KAVEKFDYRR GFKFSTYATW
WIRQAITRAI ADQARTIRIP VHMVETINKL IRVSRQLLQE LGREPQPDEI AKEIGMSVDK
VREIMKISQE PVSLETPIGE EEDSHLGDFI PDDDAPAPAE AAAFTLLKEQ LIDVLDTLTP
REEKVLRLRF GLDDGRARTL EEVGKEFNVT RERIRQIEAK ALRKLRHPSR SKKLKDYLD
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