| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_0479 |
|---|
| Symbol | |
|---|
| ID | 7309356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 549160 |
|---|
| End bp | 550620 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643607409 |
|---|
| Product | UDP-N-acetylmuramyl-tripeptide synthetase |
|---|
| Protein accession | YP_002504841 |
|---|
| Protein GI | 220927932 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
|---|
| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000570069 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAGCTAA GAGAGCTTGT AATGAATTTA AATATCAAGG CAATTAATGG AAATCTGGAT
GTGGAAGTTG ACAGTATAGC ATATGATTCC AGAAAAACAA AACAGGGCAG TCTTTTTGTT
TGTATAGAAG GAACTGTTGT TGACGGACAC AAGTACATAA ATGATGCTAT AGAAAACGGG
ACAAAGGCGT TTCTCGTTCA GAAGCATGTA GTCGTACCTG AAGGAATTAC AACTATTGAA
ATAGATGATA CAAGATTTGG ACTTGCAGCT GTATCTGATG CATTTTTTGG TCATCCTTCA
TCAAAATTCA ATCTGATAGG CATTACAGGG ACAAAAGGTA AAACTACAAC TACTTATATG
GTTAAGGCTA TCATGGAGGC TGCAGGACGT AATATGGGCC TTGTAGGGAC TCTTGCCAAC
CTAATAGGAA GTGAGGTGCT GTATACCTCC AGAACTACTC CCGAATCATA TGATTTGCAG
AGCCTCTTCA GTGATATGGT TGAAAAGAAG GTGGACAGTA CAGTTATGGA AGTATCGTCC
CAGGGACTGG AGCTGCATAG GGTTGCAAAA TGTGATTTTG ATATAGGAGT GTTTACAAAT
TTTTCAAGAG ATCATATCGG GCCAAAGGAA CATGCAACAC TTGAAGAATA CTTCAATGCA
AAAGCAAAGC TGTTTAAAAT GTGCCGTAAG GCAGTTATTA ATATAGACAG TGAGCATGGC
AGAAAAATGG CAGAACTAGC AAAATGTAAG GTGTTCACAT ACGGCTTAAG CGACAAAGCC
GATATATGGG CTTCTGATAT AGTTAAGAAA ACAGGACACA CATACTTTAC ACTCAATTCT
CCATGGGGTA GTATTGACAT TGAAACAGAT TTACAGGGTG AATTCAATAT ATACAACGCA
TTGGCGGCTA TTGGTTCCTG CTGCTTGATA CCTGGTATTA CCCTTGAGCA TGTTAGATTA
GGACTGACAA AGGTTACGGT TCCGGGTAGA ATGGAATCTG TAAAGACCGG CGGCAATTAT
TCTGTTCTCA TAGATTATGC ACATACTCCC GACAGTCTTG AACAGGTACT TAAAACAGTT
AAGGAGTTTG CTCATGGCAG GGTTGTCAGC TTGTTTGGGT GCGGAGGAGA CAGAGATAAG
GGAAAGAGAC CTGCAATGGG TGAAATTTCA GGAAATATTG CTGATTTTAC AATTATAACT
TCTGATAATC CGAGAACCGA AAACCCTGAA CAGATAATAG AAGACATTGA GGCAGGCATT
AAAAACACAA ACGGAAAATA TATTAAAATA ACCGATAGAA GGCAGGCAAT AAAATTTGCA
CTTGAAAATG CCGTGGATGG AGATATAATT ATTTTGGCAG GTAAGGGTCA TGAGACCTAT
CAGCAATTTG CCGAAAAAAC AATACACTTT GATGAACGTG AAGTAGTAAA CGAGCTGCTG
ATAGAACTCG GAAGGAGATA G
|
|---|
| Protein sequence | MKLRELVMNL NIKAINGNLD VEVDSIAYDS RKTKQGSLFV CIEGTVVDGH KYINDAIENG
TKAFLVQKHV VVPEGITTIE IDDTRFGLAA VSDAFFGHPS SKFNLIGITG TKGKTTTTYM
VKAIMEAAGR NMGLVGTLAN LIGSEVLYTS RTTPESYDLQ SLFSDMVEKK VDSTVMEVSS
QGLELHRVAK CDFDIGVFTN FSRDHIGPKE HATLEEYFNA KAKLFKMCRK AVINIDSEHG
RKMAELAKCK VFTYGLSDKA DIWASDIVKK TGHTYFTLNS PWGSIDIETD LQGEFNIYNA
LAAIGSCCLI PGITLEHVRL GLTKVTVPGR MESVKTGGNY SVLIDYAHTP DSLEQVLKTV
KEFAHGRVVS LFGCGGDRDK GKRPAMGEIS GNIADFTIIT SDNPRTENPE QIIEDIEAGI
KNTNGKYIKI TDRRQAIKFA LENAVDGDII ILAGKGHETY QQFAEKTIHF DEREVVNELL
IELGRR
|
|---|
| |