| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_0449 |
|---|
| Symbol | |
|---|
| ID | 7309328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 512654 |
|---|
| End bp | 513799 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643607379 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_002504811 |
|---|
| Protein GI | 220927902 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0031206 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAA TTATATCAAT AATCGGTTCA ACAGGCTCGA TAGGCAGGCA AACTCTGGAG
GCGGCAAAAA ACCTTGGGAT TAAAGTTGCA GCATTATCAG CAAATTCAAA TATAGATCTT
TTGGAAAAGC AGGTACACGA ATTCAAACCT GATGTTGTTT CTGTAGGCAA TAGTGAGCTG
GCAAAAGAAA TGTCAAACAG ATTACAGGGT TTCGGAATTG AAGTTTTATG GGGACAGGAC
GGTATGAAAA GAGTTGTGGA ACATTCGGAA GCTGATACCG TTGTTACTTC TGTGGTTGGA
ACAGCAGGTT TGATACCGAC AATACATGCT ATCAGGCATA AAAAAAATAT AGCACTTGCA
AACAAGGAGA CACTTGTAAC CGCAGGGCAG CTGGTAATGG AAGACGCAAA AAAGAATAAT
GTAAAAATAT TCCCCGTTGA CAGTGAACAT TCGGCTATAT ACCAGTGTCT TTTAGGAAAT
AAAGACAAGC AGGTGGAAAA AATAATATTA ACTGCTTCTG GAGGTCCTTT CAGGGGTAAG
AATATAAAGG AGCTTAAAAA TATAACACCT GCCCAGGCAT TAAAACATCC CAATTGGAGT
ATGGGAAACA AGATAACAAT TGATTCCGCT ACACTTATGA ACAAAGGACT TGAGGTAATT
GAAGCAAAAT GGCTGTTTCA GAGGGATTTG GACAGTATTC AGGTTTTAGT TCATCCGCAA
AGTATAATAC ATTCAATGGT ACAATATGTG GACGGATCGG TTATGGCTCA ACTTGGTTCA
CCTGACATGC GAATACCGAT TCAGTTGGCA TTAACCTATC CCGACAGATG TCAAAACAAT
TTTAACAAGT TGGATTTTCT TAAATGTCCT CCTTTGACAT TTGAAGAACC TGACATAGAT
ACCTTTAAAT GTCTCCGACT TGCATATAAA TCATTGGAAA TAGGCGGGAC GATGCCTGCT
GCTTTGAATG CGGCAAATGA GATTGCAGTT GCAGCATTTC TGGAAAATCA TATAGGCTTT
ACTGAAATTG CGGAAACAAT AGAGCAAGTA ATGCAAAGAC ATAATGTGAA TATTTGTCCT
TGCTTGGAAG ATATAATAGA AGTAGATTGT TGGGCAAGAA CTACGGCAAG ACAACTTATC
ATTTAA
|
|---|
| Protein sequence | MAKIISIIGS TGSIGRQTLE AAKNLGIKVA ALSANSNIDL LEKQVHEFKP DVVSVGNSEL
AKEMSNRLQG FGIEVLWGQD GMKRVVEHSE ADTVVTSVVG TAGLIPTIHA IRHKKNIALA
NKETLVTAGQ LVMEDAKKNN VKIFPVDSEH SAIYQCLLGN KDKQVEKIIL TASGGPFRGK
NIKELKNITP AQALKHPNWS MGNKITIDSA TLMNKGLEVI EAKWLFQRDL DSIQVLVHPQ
SIIHSMVQYV DGSVMAQLGS PDMRIPIQLA LTYPDRCQNN FNKLDFLKCP PLTFEEPDID
TFKCLRLAYK SLEIGGTMPA ALNAANEIAV AAFLENHIGF TEIAETIEQV MQRHNVNICP
CLEDIIEVDC WARTTARQLI I
|
|---|
| |