| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_0051 |
|---|
| Symbol | |
|---|
| ID | 7308970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 55929 |
|---|
| End bp | 57095 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643606980 |
|---|
| Product | nuclease SbcCD, D subunit |
|---|
| Protein accession | YP_002504419 |
|---|
| Protein GI | 220927510 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0420] DNA repair exonuclease |
|---|
| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAA TTCACACAGG GGACTGGCAT ATTGGGAAGA TAGTAAATGA GTTCAGTATG
CTGGAGGATC AGGAATATAT ACTCAATCAG CTAATATCTG TTATTGAAAA TGAAAAACCT
GATGCACTGA TAATCGCAGG GGACATTTTT GACAGGAGTA TACCACCTGT GGACGCAGTA
GAACTGGTAG ATAAGGTTTT CAACATAGTA CTTCTTGATC TCAGAGTTCC GATTTTTGCA
ATAGCAGGAA ACCATGACAG TGCCGAGCGT TTGTCCTTCG CCAGCAGAAT TTTAACAAAT
AATGGACTAC ATATAGCAGG GAGCTTTGAC GGTAATATAC GTAAGGTAAT TTTAGAGGAT
GGCTTCGGGC CGGTCAACTT TTATCTTATT CCTTACTCGG ATCCCCGCAC AATAAGGAAC
ATTCTACAGG ACAATGAAAT ATCTACCCAC GATGATGCAA TGAAAAAGCT TGTTGAAAAA
GTTGGACAAG CTGAGAATGA AAACAAAAGA AGTGTAATGA TAACACACGG ATACATAACA
TATATGGGAG GGCAGGCAGA TATTATAAGT GAATCGGAAA GGCCTCTTAG TATAGGAGGA
ACGGATATAG TTAACTCAAA TTACTTTAAT TCGTTCAGCT ACACTGCACT GGGCCATCTC
CATGCACCTC AAAGGGCTGG TGCTGATAAT ATAAGGTATT CCGGCTCGTT ACTTAAATAT
TCCTTTTCAG AGGTCAACCA AAAAAAGGGA ATAAATGTAG TTGAAATTGA CGGCGACGGG
AATTCCTGCG TAAAGCTAAC TGAACTAAAA CCTAAAAGAG ATATGCGTAT TATAAAAGGT
CCCCTTGAGG AGCTTTTAAA GTCAGAGGTG TACAAGGACA CAAATACTGA TGACTATATC
TATGCAATAT TAACAGACAA AGGTGAGCTT ATTGACCCTA TATCCAAGCT AAGAAGCGTT
TACCCTAATG TAATGGGACT CACAAAGGAA ATCGGAATCA GCAGGGATGA TAACAAGACC
TCTGCTTCCG AGGGCTATAA ATCCAAATCC AAATTAGAAT TGTTTCAAGA GTTCTATAGC
TCTATACAAG GAGAACCTCT AAGTTTTGAG GAATTGAAAA TAATTGAAAA GGTAATAGGA
GAGGTAGAAA CAGGAGGGTA TAAATGA
|
|---|
| Protein sequence | MKIIHTGDWH IGKIVNEFSM LEDQEYILNQ LISVIENEKP DALIIAGDIF DRSIPPVDAV
ELVDKVFNIV LLDLRVPIFA IAGNHDSAER LSFASRILTN NGLHIAGSFD GNIRKVILED
GFGPVNFYLI PYSDPRTIRN ILQDNEISTH DDAMKKLVEK VGQAENENKR SVMITHGYIT
YMGGQADIIS ESERPLSIGG TDIVNSNYFN SFSYTALGHL HAPQRAGADN IRYSGSLLKY
SFSEVNQKKG INVVEIDGDG NSCVKLTELK PKRDMRIIKG PLEELLKSEV YKDTNTDDYI
YAILTDKGEL IDPISKLRSV YPNVMGLTKE IGISRDDNKT SASEGYKSKS KLELFQEFYS
SIQGEPLSFE ELKIIEKVIG EVETGGYK
|
|---|
| |