| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_0012 |
|---|
| Symbol | |
|---|
| ID | 7308936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 11177 |
|---|
| End bp | 11815 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 643606940 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
|---|
| Protein accession | YP_002504380 |
|---|
| Protein GI | 220927471 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0912057 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATT TTAAGTATAT TTTTTTTGAT TTAGATGGAA CTCTTATTGA TACTGTCCCT
TTAATTCTGG ATTCATTTAA CTACACGTTT AATTATCATT TCGGTGAAAC ACGTCCTGAG
GAAGAGACAA TAAGCTATAT TGGAATGCCG TTAATCAATC ACTTGAGAGA TATTTATCCC
GGTCATGAGG AGGAGCTTGC AAAGACCTAC CGAGATTATA ACGATAAAAG ACATGATAGT
TGTATCGGAG TTTTTATAGG AATTTTTGAA ACAATAAAAA TCCTTTATGA AAAAGGCATT
GTCATGGGAG TTGTAACTTC AAAAAGGCGG GAACTTGCTA TAAGGGGATT AAAAATTTTT
AATCTGGATC AATTCTTTAT TTTTGTTAAC GGGTCGGAGG ATTCAAAAAA GCATAAACCT
GATGGTGACC CATTGATTGT TGCAATGAAT AGAGCCGGTG CTACAAACAA GGATGAGGTT
CTTTATGTGG GAGATAGTCC TTTGGATATA CTATGTGCTA AAAATGCAGG AGTGAAAAGT
GCAGCTGTTG CTTGGACATA CAGTCAGAGA TCTGATTTGG AAAAGGTTGA GCCGGATATA
TTTTTAGAGT GTCCTGCTGA TATTTTCAAA TATGTATAA
|
|---|
| Protein sequence | MNNFKYIFFD LDGTLIDTVP LILDSFNYTF NYHFGETRPE EETISYIGMP LINHLRDIYP
GHEEELAKTY RDYNDKRHDS CIGVFIGIFE TIKILYEKGI VMGVVTSKRR ELAIRGLKIF
NLDQFFIFVN GSEDSKKHKP DGDPLIVAMN RAGATNKDEV LYVGDSPLDI LCAKNAGVKS
AAVAWTYSQR SDLEKVEPDI FLECPADIFK YV
|
|---|
| |