| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mnod_6348 |
|---|
| Symbol | |
|---|
| ID | 7301553 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium nodulans ORS 2060 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011894 |
|---|
| Strand | - |
|---|
| Start bp | 6444994 |
|---|
| End bp | 6446727 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643603935 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002501438 |
|---|
| Protein GI | 220926136 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAG CAACCGCGGT CGGTCAGGCG GTGGACACCG CCCGGCCGAT GACCCGGGAG
GAGAAGCGGG TCATCCTGGC TTCGTCCCTC GGCACCGTCT TCGAGTGGTA CGACTTCTAT
CTCTACGGCT CGCTCGCCGC GGTGATCGGC GCGCAGTTCT TCTCCGCCTA CCCGGAGGCG
ACCCGCAATA TCTTCGCGCT GCTCGCCTTC GCGGCGGGCT TCCTGGTGCG GCCCTTCGGC
GCCCTGGTGT TCGGGCGGCT CGGCGACATG GTCGGGCGCA AGCACACCTT CCTCATCACC
ATCCTGATCA TGGGCCTGTC GACCTTCTGC GTCGGCCTGC TGCCCTCCTA CGGCATGCTG
TCCGCCTACG GCATCGGCTG GGTCGCGCCC GTGACGCTGC TCGCTTTGCG CATGTTCCAG
GGCCTCGCGC TGGGCGGCGA GTACGGAGGG GCCGCGGTCT ACGTGGCCGA GCACGCGCCC
CGCGGCCGGC GCGGCTTCTA CACGTCGTTC ATCCAGACCA CGGCGACGCT GGGCCTGCTT
CTGTCGCTCA TCATCATCCT GTCGACGCAG GGCTACGTGA ACACGGCCTA TCCGGCCACC
GTCACGCAGA ACCCGGACGG CACGACGACG ACGCTCACGG CCTTCCAGGT CTGGGGCTGG
CGCATTCCCT TCCTGGTCTC GGTGGTGCTG CTCGCCATCT CGGTCTGGAT CCGGCTGCAG
ATGCAGGAGA GCCCCGCCTT CAAGAAGATG AAGGAGGAGG GCACGCACTC GAAGGCGCCG
CTCTCGGAGG CGTTCGGCCA GTGGCGCAAT GCCAAATGGG CGCTCCTCGC GCTCCTCGGC
CTCACCGCCG GCCAGGCCGT TGTCTGGTAC ACGGGCCAGT TCTACGCCCT GTTCTTCCTC
CAGAGCATCC TTAAGGTCGA CCAGTACACC GCGAACGTGC TGATCGCGTG GTCGCTGATC
CTCGGCACCG GCGGCTTCCT GTTCTTCGGG GCGCTGTCCG ACAAGATCGG CCGCAAGCCG
ATCATCCTGG GCGGCTGCCT GATCGCGGCG ATGACCTACT TCCCGCTGTT CAAGGTGCTC
ACCGCCAATG CCAACCCGAA GCTCTACGCG GCGCAGGGCA GCGTCGAGGT GGTGGTCAAG
ACGAACCCGG ACGAGTGCTC GTTCCAGTTC AATCCCGTCG GCACGGCCAA GTTCACCAAG
GAGTGCGACA TCGCCAAGGC GCTGCTCGCC CGCAGCGCGG TGAACTACCG GACCGAGGCG
GTCCCGGCCG GCACGCCCAC CACCGTCAGC ATCGCGGGCA AGGACTTCGC GGTGAGCGAT
CCGGCCTTCG CCAAGGCGGT TCCGGCCGCC CTCACGGAGG CGGGCTATCC GGGCGCCAAC
AACCCCGACA TCATCAAGGC GGCGAACCCG ATCGACATCT TCTCGGGCCA GAAGCTGATC
GTGGTCGCCA TCCTGACGGT TCTCGTCCTC TACGTGACGA TGGTCTACGG CCCGATCGCG
GCGGCGCTGG TCGAGCTGTT CCCGACCCGC ATCCGCTACA CCTCGATGTC CCTGCCCTAC
CACATCGGCA ACGGCTGGTT CGGCGGCCTC CTGCCCGCCA CCTCCTTCGC CATGGTGGCC
CAGACCGGCG ACATCTATTA CGGCCTCTGG TACCCGATCG TGATCGCCAT GATGACCTTC
GTCATCGGCC TCCTGTTCGT GCCGGAGACC AAGGACCGCG ATATCCTCGC CTGA
|
|---|
| Protein sequence | MATATAVGQA VDTARPMTRE EKRVILASSL GTVFEWYDFY LYGSLAAVIG AQFFSAYPEA
TRNIFALLAF AAGFLVRPFG ALVFGRLGDM VGRKHTFLIT ILIMGLSTFC VGLLPSYGML
SAYGIGWVAP VTLLALRMFQ GLALGGEYGG AAVYVAEHAP RGRRGFYTSF IQTTATLGLL
LSLIIILSTQ GYVNTAYPAT VTQNPDGTTT TLTAFQVWGW RIPFLVSVVL LAISVWIRLQ
MQESPAFKKM KEEGTHSKAP LSEAFGQWRN AKWALLALLG LTAGQAVVWY TGQFYALFFL
QSILKVDQYT ANVLIAWSLI LGTGGFLFFG ALSDKIGRKP IILGGCLIAA MTYFPLFKVL
TANANPKLYA AQGSVEVVVK TNPDECSFQF NPVGTAKFTK ECDIAKALLA RSAVNYRTEA
VPAGTPTTVS IAGKDFAVSD PAFAKAVPAA LTEAGYPGAN NPDIIKAANP IDIFSGQKLI
VVAILTVLVL YVTMVYGPIA AALVELFPTR IRYTSMSLPY HIGNGWFGGL LPATSFAMVA
QTGDIYYGLW YPIVIAMMTF VIGLLFVPET KDRDILA
|
|---|
| |