Gene Mnod_4386 details

Gene Information

• Locus tag: Mnod_4386
• ID: 7303028
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylobacterium nodulans ORS 2060
• Kingdom: Bacteria
• Replicon accession: NC_011894
• Strand: +
• Start bp: 4434696
• End bp: 4436582
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 643602034
• Product: TRAP C4-dicarboxylate transport system permease DctM subunit
• Protein accession: YP_002499560
• Protein GI: 220924258
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component; [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component
• TIGRFAM ID: [TIGR00786] TRAP transporter, DctM subunit

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.575529
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATCTCG AACTCGCGGA CGAGACGCCG GCTGCACCGG CGCTCACCGG CCGCCGGGCC 
CGGTTGAAAT GGCTCGACGA TGCGTTGGGC GTAGCGATCG AGGTGCCGGC TGCGCTCCTC 
GTGGTGCTGG AGATCGTGGT GCTGCTCTCC GGCGTGGTGA GCCGCTACGT CTTCCACCAG 
CCGATCGTGT GGGCGGACGA ACTCGCCTCG ATCCTGTTCC TGTGGCTCGC CATGCTCGGC 
GCCGTCGTCG CCTACCGGCG CGCCGAGCAC ATGCGCATGA CCGCCATGGT CAGCCTCGCC 
TCGCCGAAGG CCCGCGCCTT CCTCGACGCG GTCTCGCTCG CCGCAGGCCT CGTCTTCATC 
GGTCTCCTGC TCGAACCCGC CTACGAGTTC GCCAGCGAGG AGCTGTTCGT CCAGACGCCG 
GCGCTCGAGA TCACCAATGC TTGGCGGGCC GCCGCCCTGC CGGTCGGCTT CGTGCTGATG 
CTCGCCATCG CGGTGCTGCG CCTCGTCGAG AGCGCCGACT GGAAGGCGTC GCTCGGCGCC 
CTGCTGCTCG CGGGCCTGGT GGTCGGCGGC CTCGTGCTGG CCGAGCCGAC CCTGCGCACG 
CTTGGCAACT GGAACCTGCT GATCTTCTTC GTGCTCGGGG TCGGGGCGCT GGTCTTCTCG 
GGCGTGCCGA TCGCCTTCGC GTTCGGGCTC GCCACCTTCG GCTATCTCAC CTTCACCACG 
CGGGCGCCGT CCATGGTCGT GGTGGGGCGG ATGGACGAGG GCATGAGCCA CCTGATCCTG 
CTCGCGGTGC CGCTCTTCGT CTTCCTGGGG CTCCTCATCG AGATGACCGG CATGGCCCGC 
GCCATGGTGG GCTTCCTCGC CGCCCTGCTC GGCCACGTGC GCGGCGGCCT GCACTACGTG 
CTGGTCGGAG CCATGTACCT CGTCTCGGGC ATCTCCGGCT CGAAGGCCGC CGACATGGCG 
GCGGTGGCGC CGGTGCTCTT CCCCGAGATG AAGGCGCGCG GCGCCAAGGA GGGCGACCTG 
GTGGCGCTGC TCGCCGCCAC CGGCGCGCAG ACCGAGACCA TCCCGCCCTC GCTGGTGCTG 
ATCACCATCG GCTCGGTGAC CGGCGTGTCG ATCACCGCCT TGTTCACCGG CGGCCTGCTG 
CCCGGGCTGG TGCTCGGGGT CACGCTCTGC CTGCTCGTCT GGTGGCGCTA TCGCAACGAA 
GACCTGAGCC ATGTGCGCCG CGCGAGCTGG GGCGAGATCG GCCGTGCCTT CGTGATCGCC 
ATCCCGGCGC TGGCGCTGCC CTTCGTGATC CGGGCGGCGG TGGTCGAGGG CGTGGCGACG 
GCGACCGAGG TCTCGACCAT CGGCATCGTC TACGCGGTGC TGGCCGGCCT CCTGATCTAC 
CGCCAGTTCG ACTGGAAGCG GCTCTACCCG ATGCTGGTCT CGACCGCCTC GCTGTCGGGG 
GCGATCCTGC TGATCATCGG GGCGGCCACC GGCATGGCCT GGGCGCTCAC CCAGTCGGGC 
TTCTCGCAGA GCCTCGCCGT CATCATGAAG GGCCTGCCCG GCGGGGCGCT CGGCTTCCTG 
ATCGTGTCGG CGCTGGCCTT CATCGTGCTG GGCTCGGTGC TGGAGGGCAT CCCGGCGATC 
GTGCTGTTCG GGCCGCTGCT GTTCCCGATC GCTCGTCAGG TCGGCGTGCA CGAGGTGCAC 
TACGCCATGG TGGTGATCCT CGCCATGGGC GTCGGCCTGT TCGCGCCGCC CTTCGGGGTG 
GGCTACTACG CGGCCTGCGC CATCAGCCGG ATCCATCCGG ATGCCGGCAT ACGGCCTATC 
ATCGGCTACA TCCTGGCGCT GCTCGCCGGC CTCGTGGTCG TCATCCTGGT GCCCTGGATC 
TCGATCGGCT TCCTCACCGC GCCGTAG 

 

Protein sequence

MHLELADETP AAPALTGRRA RLKWLDDALG VAIEVPAALL VVLEIVVLLS GVVSRYVFHQ 
PIVWADELAS ILFLWLAMLG AVVAYRRAEH MRMTAMVSLA SPKARAFLDA VSLAAGLVFI 
GLLLEPAYEF ASEELFVQTP ALEITNAWRA AALPVGFVLM LAIAVLRLVE SADWKASLGA 
LLLAGLVVGG LVLAEPTLRT LGNWNLLIFF VLGVGALVFS GVPIAFAFGL ATFGYLTFTT 
RAPSMVVVGR MDEGMSHLIL LAVPLFVFLG LLIEMTGMAR AMVGFLAALL GHVRGGLHYV 
LVGAMYLVSG ISGSKAADMA AVAPVLFPEM KARGAKEGDL VALLAATGAQ TETIPPSLVL 
ITIGSVTGVS ITALFTGGLL PGLVLGVTLC LLVWWRYRNE DLSHVRRASW GEIGRAFVIA 
IPALALPFVI RAAVVEGVAT ATEVSTIGIV YAVLAGLLIY RQFDWKRLYP MLVSTASLSG 
AILLIIGAAT GMAWALTQSG FSQSLAVIMK GLPGGALGFL IVSALAFIVL GSVLEGIPAI 
VLFGPLLFPI ARQVGVHEVH YAMVVILAMG VGLFAPPFGV GYYAACAISR IHPDAGIRPI 
IGYILALLAG LVVVILVPWI SIGFLTAP