| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mnod_3498 |
|---|
| Symbol | |
|---|
| ID | 7308863 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium nodulans ORS 2060 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011894 |
|---|
| Strand | - |
|---|
| Start bp | 3616248 |
|---|
| End bp | 3618632 |
|---|
| Gene Length | 2385 bp |
|---|
| Protein Length | 794 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643601168 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) |
|---|
| Protein accession | YP_002498712 |
|---|
| Protein GI | 220923410 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAGG TCGTTGGTTG CTTCGTCGGC GCACATGATC TGTGGCTGGT TGCCCTCGCG
GCCGCCATCT GCACGCTCGC CGCGATCACG ACCGTCGGCC TTCTGCACCA CGCATGCAGG
ACCACGCGGT GGTTGCGGTT TGCCTGGGTC TGCGTCGCGG CCGTCGCAGG CGGTTCTGGT
ATCTGGGCGA CCCATTTCAT TGCCATGCTG GCCTTCGAGC CGGGACTGCC GAGCGGCTAC
GATATCGGCC TCACCGTTCG CTCACTTGCC TATGCAGTCG TGCTGACCGG CCTCGGGCTT
GCGGTCACCT TGCTGCGGAG AATCCCGTTC ACGGCAGGGC TCGGAGGCCT GATCCTCGGA
AGCGGCATCG CGGCCATGCA CTACACCGGC ATGGCTGCTT TCGAGATCGC CGGCCGCATC
ATCTGGGATC CCACCCTCGT TGCCGCCTCG CTCGTGCTCG GCGCGCTCCT TGGCGGCGCG
GCTCTGCCGG TCGCCCTGGG ACCACACGGC GTCCGGAGCC AGACCGCAGG CGCCCTGTTG
CTGCTCGGCG CCATCTGCAG CCTCCACTTC ATCGCGATGG GGGCCTTGAC GATCGTGCCC
GATCCGAGCA TCGCGATCTC TGAGACCGCC GTGCCCTCGC GTTGGCTCGC TGTGGCGGTC
GCGCTCGCAA GTGGTGCCAT CCTGCTCCTC GCTGGCGGCG CCCTGGCCCT CGACATCCGC
GACCGGAGAA CCATCGTGGA GAGCGAGCGC CTGCGCAGCC TCGCGAACGC GGCCGTCGAA
GGTCTCGTTG TGTGTCGGGA TGACATCATC GTCAGTGCCA ATGACAGCTT CGGCCGGCTC
GTCGGCATCG CGGCCACCGC CGTGGCCGAG TCCAGTCTTT CACGCTTTCT GCCTGATCCA
GCAACGCGTC TCGCTTTGAC CCGCCAATCG GAGCAGCTGA TCGAAACGGA GTTGCGCGGA
GCCGAGGGCG AAATGATCCC GGTCGAGGTG ATCATGCGGC CGGTTACCTA CGGTCGCCGC
CCCCACTTTG CCGTTGCCGT GCGAGATCTC AGGGCCAGGC GGCAGGCCGA AGGCCGGATC
CAGTTTCTCG CCCACCACGA TGCACTCACG GGTCTGGCCA ACCGGACGAG CTTCACCCAG
CGGCTCGACC TGGAGCTGAA GCTCGCCGAG GCAACCGGTC GGAAGCTCGC CGTGCTCTGC
CTGGATCTCG ATCGCTTCAA GGAAGTCAAC GACCTGTTCG GCCATGCGGC TGGCGATGCG
ATGTTGGTGA ACGTCGCACG CGTCGTCACA GGTATCCTCG GCGAGACGCA GATGATGGCC
CGTCTCGGTG GGGACGAGTT TGCGGTCCTG GCCGCCTGCG ATCACGCCAT AACTGCGGGA
CATCTCGCCG AGCGCATCCT GGAGGCGTTG CGCAGCGAGA ACGCGGACGC AGCCGGCCCG
CTCGTCGCTA CCAGCATTGG CATCGCGCTC TATCCGGATG ATGCGAGCGA GCGGGACGTC
CTGCTGAGCC ACGCCGATAC GGCTCTCTAT CGGGCAAAGT CCGAAGGGCG GGGCACCTAC
CGGTTCTTCG AGCACAAGAT GGGTGTCCAG GTTCGCGACC GGCGGATCCT GGAACACGAG
CTGCGCCACG CCGTCGCGCG GGGCGAAATG CACCTCGTCT ACCAGCCGCA GACGCAGGTC
GAGACGGGCG AAGTCATCGG CTTCGAGGTG CTCCTACGCT GGCACCACCC CGAGCGCGGT
GCCGTTTCGC CCGCTGTCTT CATTCCGATC GCGGAGGAGA GCGGCGCGAT CCTGCAGATC
GGCGAATGGG TCCTGCGCCA GGCCTGTCGG GACGCTGCAA GCTGGCCGAA CCCGCTCGCG
GTGGCGGTCA ACGTCTCGGC CGTTCAGATC CACGCGCCGC ATTTCGTGCA GCTCGTGCAC
GAGGTGCTCC TCCAGACCGG TTTGAAGCCG GATCGGCTCG AGATCGAGAT CACCGAGACG
GCCTTGATCC GCGATCCCGT CCGTGCCCTG TCGACCCTGC GTCAGGTGAA GGCGCTCGGG
GTCCATATTG CCATGGATGA TTTCGGCACC GGCTATTCGT CGCTGTCGAA TCTGCGCTCG
TTTCCCTTCG ACAAGATCAA GATCGATCCC TCTTTCATCC GGGCGGTGGA CACGAACGAG
CAGACGGCAG CGATTGTGCG TTCCGTCCTA GGCCTCGGCC GTGGCCTTGG GCTGCCTGTC
CTTGCGGAAG GTGTGGAGAC GGATGCGGAG CTGCGCTTCC TCGCTGCCGA GAACTGCGAC
GCAGCCCAAG GCTACCTGAT GGGACGGCCA GCCCCGATCG AGCGGTTCTC GCAATTTACG
CACGGCATCC AGGATGAACC CGGCAAGCCA GGATTGGTGG CGTAA
|
|---|
| Protein sequence | MLKVVGCFVG AHDLWLVALA AAICTLAAIT TVGLLHHACR TTRWLRFAWV CVAAVAGGSG
IWATHFIAML AFEPGLPSGY DIGLTVRSLA YAVVLTGLGL AVTLLRRIPF TAGLGGLILG
SGIAAMHYTG MAAFEIAGRI IWDPTLVAAS LVLGALLGGA ALPVALGPHG VRSQTAGALL
LLGAICSLHF IAMGALTIVP DPSIAISETA VPSRWLAVAV ALASGAILLL AGGALALDIR
DRRTIVESER LRSLANAAVE GLVVCRDDII VSANDSFGRL VGIAATAVAE SSLSRFLPDP
ATRLALTRQS EQLIETELRG AEGEMIPVEV IMRPVTYGRR PHFAVAVRDL RARRQAEGRI
QFLAHHDALT GLANRTSFTQ RLDLELKLAE ATGRKLAVLC LDLDRFKEVN DLFGHAAGDA
MLVNVARVVT GILGETQMMA RLGGDEFAVL AACDHAITAG HLAERILEAL RSENADAAGP
LVATSIGIAL YPDDASERDV LLSHADTALY RAKSEGRGTY RFFEHKMGVQ VRDRRILEHE
LRHAVARGEM HLVYQPQTQV ETGEVIGFEV LLRWHHPERG AVSPAVFIPI AEESGAILQI
GEWVLRQACR DAASWPNPLA VAVNVSAVQI HAPHFVQLVH EVLLQTGLKP DRLEIEITET
ALIRDPVRAL STLRQVKALG VHIAMDDFGT GYSSLSNLRS FPFDKIKIDP SFIRAVDTNE
QTAAIVRSVL GLGRGLGLPV LAEGVETDAE LRFLAAENCD AAQGYLMGRP APIERFSQFT
HGIQDEPGKP GLVA
|
|---|
| |