| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mnod_3160 |
|---|
| Symbol | |
|---|
| ID | 7305295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium nodulans ORS 2060 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011894 |
|---|
| Strand | + |
|---|
| Start bp | 3264099 |
|---|
| End bp | 3265763 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643600848 |
|---|
| Product | SSS sodium solute transporter superfamily |
|---|
| Protein accession | YP_002498393 |
|---|
| Protein GI | 220923091 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4147] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.261717 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTGC GTCCCCTCCT CCCGGTTCTC CTGCTCCTGG CCCTCCCGGC GGGGCCGGCG
CTCGCCGACG CGCTGTCGGG TCCGACCGAG CGGCAGGCCG TGAACCCAAC CGCGATCGGG
CTCTTCCTCG TCTTCGTCGC GGTCACCCTC GGCATCACCG TGCGGGCGGC CCGGCGCGGC
ACCCGCACGG CGAGCGACTT CTACGCCGCG GGCGGGGGCC TGAGCGGCGT CCAGAACGGG
CTCGCCATCG CGGGCGACTA CACCTCGGCC GCCACGTTCC TCGGAGTGAC GGCGCTCGTC
TACAGCTCGG GCTACGACGG GATGATCTAC GCGGTCGGGT TCCTGGTCGG CTTCCCGATG
ATCCTGTTCC TGATCGCCGA GCCCCTGCGC AACCTCGGCC GCTACACCTT CGCGGACGTC
GCTGCCTACC GCCTGTCCGA AGTGCCGGTG CGGCTGGTGG CGGGGCTCAA CACGCTCGTG
ATCGTGCTCC TCTACCTGAT CGCCCAGATG GTCGGGGCCG GCAAACTCGT CGAGCTCCTG
TTCGGTCTCC CCTACGCTAC CGCCGTCGCG CTCGTGGGCA TGCTGATGAT GCTCTATGTC
GCCTTCGGCG GCATGCGGGC GACAACCTGG GTGCAGATCA TCAAGGCGGT GCTGCTCCTC
TCGGGGACGG CCCTGATGTC CGCGCTCATC CTCGCCCAGT TCGGCTTCAG CCTCGAGGCC
CTGTTCGGGC GGGCGATCGC TCTGCACCCG AAGAGCCACG CCATCATGGC TCCGGGCGGC
CTCGTGCGGG ATCCGGTCTC GGCGCTCTCC CTCGGCCTCG CGCTGATCTT CGGCACTGCC
GGCCTGCCGC ACATCCTGAT GCGCTTCTTC ACGGTGGCGG ATGCCCGCCA GGCACGGCTC
TCGGTGCTGG TCGCCACCGG CTTCATCACG GTGTTCTACA CGCTGCTCTT CGTGCTCGGC
TTCGGGGCGA TCGCCCTCGT GCTCGGCAAC CCCGCCTTCA CGGACACCGC CGGGCGTCTG
ATCGGCGGCC CCAACATGGT GGCGCTGCAC CTCGCCGACC GACTTGGCGG CGCACCGCTC
CTCGGCTTCA TCTCGGCGGT CGCCTTCGCG ACGATCCTCG CCGTCGTCTC GGGGCTCACG
ATCGCCGGAG CCTCGGCGGC CAGCCACGAC CTCTACGCCC GCGTCCTGCG GCGCGGGCGG
GCGAGCGAGC AGGAAGAGGT GCGGGTCTCG AAGATTGCCG CGGTGGCGAT CAGCCTCGCC
GCCATGGCGC TGGGCCTGCT CTTCGAGAAC CAGAACATCG CCTTCCTGGT CGGGCTCGTC
TTCGCGATCG CGGCCAGCGC CAACTTCCCG GTGATCGTGC TCTCGGTGTC CTGGCGGGGG
CTGACCACGC GCGGGGCGGT GGCGGGCTCG CTGGCGGGCC TTCTCTGCGC GCTCGCCCTG
ATGGCGCTCG GCCCGAGCGT CTGGACGGCG GTACTCGGCC TGGGGCCGGC GCCCCTCCCC
TATGACAACC CGGCCTTGTT CTCGGTGCCG CTCGCCTTCC TGACCGCCGT CGCGGTCTCG
CGCCTCGACC GCAGCGCTGC CGCGGCGCGT GTCCGCGCGG CCTTCCGCGC CCAGCACGTC
ACCGCCCAGA CCGGCTTCGA CCGGCCCCGG GCCGCCGCCC ACTGA
|
|---|
| Protein sequence | MSVRPLLPVL LLLALPAGPA LADALSGPTE RQAVNPTAIG LFLVFVAVTL GITVRAARRG
TRTASDFYAA GGGLSGVQNG LAIAGDYTSA ATFLGVTALV YSSGYDGMIY AVGFLVGFPM
ILFLIAEPLR NLGRYTFADV AAYRLSEVPV RLVAGLNTLV IVLLYLIAQM VGAGKLVELL
FGLPYATAVA LVGMLMMLYV AFGGMRATTW VQIIKAVLLL SGTALMSALI LAQFGFSLEA
LFGRAIALHP KSHAIMAPGG LVRDPVSALS LGLALIFGTA GLPHILMRFF TVADARQARL
SVLVATGFIT VFYTLLFVLG FGAIALVLGN PAFTDTAGRL IGGPNMVALH LADRLGGAPL
LGFISAVAFA TILAVVSGLT IAGASAASHD LYARVLRRGR ASEQEEVRVS KIAAVAISLA
AMALGLLFEN QNIAFLVGLV FAIAASANFP VIVLSVSWRG LTTRGAVAGS LAGLLCALAL
MALGPSVWTA VLGLGPAPLP YDNPALFSVP LAFLTAVAVS RLDRSAAAAR VRAAFRAQHV
TAQTGFDRPR AAAH
|
|---|
| |