Gene Mnod_3043 details

Gene Information

• Locus tag: Mnod_3043
• ID: 7303970
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylobacterium nodulans ORS 2060
• Kingdom: Bacteria
• Replicon accession: NC_011894
• Strand: +
• Start bp: 3136157
• End bp: 3137992
• Gene Length: 1836 bp
• Protein Length: 611 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 643600742
• Product: type VI secretion system Vgr family protein
• Protein accession: YP_002498287
• Protein GI: 220922985
• COG category: [S] Function unknown
• COG ID: [COG3501] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR01646] Rhs element Vgr protein; [TIGR03361] type VI secretion system Vgr family protein

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.313865
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCCCGACG AGCCGAAACA GACCCAGCGC ATCGCCCGGC TGACCACGCC GCTCGGGGCG 
GACCGGCTCG TGCTCGCCCG CTTCGAGGCC GAGGAGGGCC TGAGCACCCT GTTCGAGTTC 
CGCGTCGACG CGCTGAGCAC GCAGGCGAAC CTCGACTTCA CCCGCGCGCT CGGCCGCACC 
TGCACGGTGT CGGTCGCGAG CTACGGAGGC GCGACGCGCC ACTTCAACGG CGTGCTCACC 
GAGGCGCGCT GGGCCGGGAT CGAGCAGTCG GCCTACCACG CCTACCGGCT CACCCTGCGT 
CCCTGGCTCT GGCTCCTCGG GCGCAAGGCC GATTGCCGGA TCTTCAAGGA CAAGACGCCC 
CTCGACATCA TCGAGGACGT GTTCCAGCGC GGCGGCTTCC CGGATTTCGA GGTGCGGGCG 
AGCCGGGGCG ACTACCCGAA GCTCGACTAC TGCGTGCAGT ACCGCGAGAG CGACCTCGCC 
TTCGTGTCGC GGCTGATGGA GCTCTACGGG ATCTACACCT TCCACGAGCA CGGCGAGGAC 
CGCCACGTCC TCGTCCTCGC CGATGCCCGC TCCTGCCACA AGCCGGTCGC CGCCGCGGGC 
GGGCGGATCC CCTTCGTGGC GCTTGCCGGC AGCGACCAGC CCGAGGCGGA GCACATCCAC 
TCCTGGGAGG CCGAGCGGCG CTTCCGCACC GGCCGGATGG CGCTCAACGA CTTCGACCCG 
ATGAAGCCCG CCGCCGACCT GAAGGCGGAC GCGCAAGCCT CCGAGGGCTA CGCGCGCGCC 
TTGCTCGAAG CCTACGACTA TCCCGGCCGC TACACCGAGC AGGAGCGCGG CCGGCGCCTC 
GCGCGGGTGC GGCTCCAGGC CGAGCAGGCG CTCGATCACC GCAAGCACGT CGCGGGCGAC 
GCCGTGAGCC TCGCGCCGGG CGGCCTCGCC ACGGTGCAGG GCCACCCGAC CGACGACGGC 
GAGTACCTCG TGGTGAGCGC CCGCCACGTC TTCGCGGGCG AGGCCTACCG CACCGGGGCC 
GAACCGGTCG CGGCCGGCGC CGCCTATCGC GGGCAGTACG AATTCCTGCG CAGCGACATC 
CCGTTCCGGG CGCCCCCCGT CACCCCGCGC GCCCTCGTGC ACGGCCCGCA GACCGCGACC 
GTCGTCGCCC GCAAGGGCAA GGAGGGCGAG GAGATCGACG TGGACGAGGA GGGGCGCGTC 
TTCGTGCAGT TCCACTGGAA CCGCGAGCGC GACGTGATCT CCCGGCCCGT CCGGGTCGCC 
CAGATGTGGG CGGGCAAGTC CTGGGGCTGG CAGGTCATCC CACGCGTCGG CCAGGAGGTG 
GTGGTCGAGT TCCTCGAAGG CGATCCCGAC CGGCCGCTCG TCGTCGGCGC CGTCTACAAC 
AAGAACAACC GATTCCCCTA CGCGCTGCTC GACGACAAGA CCGTCTCGGG CGTCAAGTCG 
GACGCGAGCA AGGGTCACAA CGGCCACAAC GAGTTCGCAC TCGACGACCG CAAGGGCGGC 
GAGCTGGTGC GGCTGCGGGC CGAGCGCGAC CACGAGACCT TGGTGCGGCG GGCCGAGACG 
CGCACCATCG GCGAGGCCTT CGCGCCGGCC GCGGGCGCGC CCTCGCGCAC CACGACGCTC 
CGGAACGGGG ACGACCGGCT CAGCATCGAG AACGGCAACT GGAGCGTCGA GGCCGCCGGC 
ACGGTCTCGA TCAAGGCCGG CACGCGGCTC GTGCTTCAGG TCGGGGCGAG CCGCATCGTC 
ATGGAGCCCG CCAGGATCCG CATCGAATCC GGCGACATCG CGATCGACGG GGCGGCGCAT 
CTCGCCCTCA CGAGCGCGCA GCTGAGCATC GGGTGA 

 

Protein sequence

MPDEPKQTQR IARLTTPLGA DRLVLARFEA EEGLSTLFEF RVDALSTQAN LDFTRALGRT 
CTVSVASYGG ATRHFNGVLT EARWAGIEQS AYHAYRLTLR PWLWLLGRKA DCRIFKDKTP 
LDIIEDVFQR GGFPDFEVRA SRGDYPKLDY CVQYRESDLA FVSRLMELYG IYTFHEHGED 
RHVLVLADAR SCHKPVAAAG GRIPFVALAG SDQPEAEHIH SWEAERRFRT GRMALNDFDP 
MKPAADLKAD AQASEGYARA LLEAYDYPGR YTEQERGRRL ARVRLQAEQA LDHRKHVAGD 
AVSLAPGGLA TVQGHPTDDG EYLVVSARHV FAGEAYRTGA EPVAAGAAYR GQYEFLRSDI 
PFRAPPVTPR ALVHGPQTAT VVARKGKEGE EIDVDEEGRV FVQFHWNRER DVISRPVRVA 
QMWAGKSWGW QVIPRVGQEV VVEFLEGDPD RPLVVGAVYN KNNRFPYALL DDKTVSGVKS 
DASKGHNGHN EFALDDRKGG ELVRLRAERD HETLVRRAET RTIGEAFAPA AGAPSRTTTL 
RNGDDRLSIE NGNWSVEAAG TVSIKAGTRL VLQVGASRIV MEPARIRIES GDIAIDGAAH 
LALTSAQLSI G