| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A2cp1_3894 |
|---|
| Symbol | |
|---|
| ID | 7297151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaeromyxobacter dehalogenans 2CP-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011891 |
|---|
| Strand | + |
|---|
| Start bp | 4331185 |
|---|
| End bp | 4334271 |
|---|
| Gene Length | 3087 bp |
|---|
| Protein Length | 1028 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643596703 |
|---|
| Product | formate dehydrogenase, alpha subunit |
|---|
| Protein accession | YP_002494283 |
|---|
| Protein GI | 220918979 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTCA CCCGACGCCA GTTCCTTCAG CTCACCGCCG CCGGCGTGGG CAGCACCGGC
CTGGTCGCGC TGGGCTTCTC CCCGGATCGC GTCCTCGCCG ACGTCCGCAA CTTCAAGCTG
TCGCGCACCG CCGAGACGCG GAACACCTGC CCGTACTGCT CGGTGGGCTG CGGCGTCATC
CTCTACACGC TGGGCGATCG CTCCAAGAAC GCGCACAGCG CGGTGATGCA CGTCGAGGGC
GATCCCGACC ACCCCGTGAA CCGCGGCACG CTCTGCCCGA AGGGCGCGTC GTTGCTCGAC
TTCGTCCAGA GCCCGAACCG CCTGCGCTAC CCCGAGTACC GCGCGCCCGG CTCCGACAAG
TGGGAGCGCG TCACCTGGGA CTGGGCGCTC GACCGGATCG CGCGCCTCAT GAAGGACGAC
CGCGACAAGA ACTTCGTCGC GAAGAACGCG GCGGGCGTGA CGGTGAACCG CTGGCCCACC
GTCGGCCTGC TGGCCGCGAG CGCCTCGTCG AACGAGACCG GCTACATCAC CCACAAGGTC
TGGCGCGCGC TGGGCGGGGT CGCGATCGAC AACCAAGCAC GTGTTTGACA CGGTCCAACG
GTGGCCGGTC TGGCCCCCAC GTTCGGCCGT GGCGCGATGA CGAACAGCTG GGTCGACATC
AAGAACGCCA ACCTCGTCCT CGTCATGGGC GGCAACCCCG CCGAGGCGCA CCCCTGCGGC
TTCAAGTGGG TGGTCGAGGC GAAGGCGCAC AACAAGGCGC AGCTCATCGT GGTCGACCCG
CGCTTCACGC GGACCGCCGC GGTCGCCGAC GTCTTCGCGC AGATCCGCCC GGGCACCGAC
ATCGCGTTCC TGGGCGGCGT CATCCGGCAC CTGCTGGAGA AGGACGCGAT CCAGAAGCAG
TACGTGACCG CGTACACCAA CGCCTCGCTC ATCGTGAAGG AGGGCTACGG CTTCCAGGAC
GGCCTGTTCT CCGGGTACGA CGAGGCGAAG CACACCTACG ACAAGTCGAC CTGGTCGTAC
GAGACCGGAC CGGACGGCTT CGCGAGGAGC GACCCGACGC TGCAGGACCC GCGCTGCGTG
TACCAGCTCA TGAAGAAGCA CTACGCGCGC TACACGCCGA AGATGGTGGC GGACATCACC
GGCGTGCCCG AGGCCGCGTT CACGCGCATC TGCGACGCGA TCGCCACCAC CTCCGCGCCG
GACCGCACCA TGACGGCGCT GTACGCGCTC GGCTGGACGC AGCACTCGGT CGGCTCGCAG
AACATCCGCT GCATCGCGAT GATCCAGCTG CTGCTCGGCA ACGTGGGCAT GGCCGGCGGC
GGCGTGAACG CGCTGCGCGG CCACTCCAAC ATCCAGGGGC TGACCGACCT CGGCCTGCTC
TCCGACCTGC TGCCCGGCTA CCTCACCGTG CCGCGCGACG CGGACACCGA CGTCGAGACG
TACCTGGCGA AGCGGACCCC GAAGCCGCTC CGGCCCGGCC AGATGAACTA CTGGCAGAAC
TACCCGAAGT TCTACGCGTC GCTCATGAAG GCCTGGTACG GGAAGGCCGC CACCAAGGAG
AACGGCTGGG CGTACGACTA CCTGCCCAAG CTCGACAAGG TCTACGACAT CCTCGCGGTC
TTCGACCTGA TGCACCAGGG CAAGGTGAAC GGGTACCTCT GCCAGGGCTT CAACCCGCTC
GCGTCGATCC CGAACAAGCC CAAGCTGCTC GAGTCGCTCT CGAAGCTGAA GTTCCTCGTC
ACCATCGACC CGCTCGTCAC CGAGACCTCG AACTTCTGGC AGAACCACGG CGACCTCAAC
CCGGTCGAGT CCGCGAAGAT CCAGACCGAG GTGTTCCGGC TGCCCTCCAG CTGCTTCGCC
GAGGAGGACG GGTCGCTGGT GAACTCCGGG CGCACGCTGC AGTGGCACTG GAAGGCGGCC
GAGCCGCCCG GCGAGGCGAA GGGCGACCCC GAGATCGTCG CGGCGCTCTT CACCCGCATC
CGGGCGCTCT ACGAGAAGGA GGGCGGCGCC TTCGCGGATC CGATCCGCGA CCTGACCTGG
GACTACAAGA TCCCGCGCGC GCCGTCGGCC GAGGAGCTCG CCCGCGAGTT CAACGGCAAG
GCGCTCGCGG ACGTGAAGGA CCCCAAGGCG GATCCGAAGG ACCCGAAGGC CCCGCTGCTG
GCGAAGGAGG GCGAGCAGCT CGCCACGTTC GCGCACCTGC AGGACGACGG CAGCACCGCG
TCCGGCAACT GGCTGTACTG CGGCTCCTTC ACGCAGGCCG GCAACCAGAT GGCGCGCCGC
GACGTCTCCG ACCCGAGCGG CCTGGGCGTC ACGCCGTCCT GGGGCTGGTC GTGGCCGGCC
AACCGCCGCG TGCTCTACAA CCGCGCCTCC TGCGATCCGT CCGGGAAGCC GTGGGACAAG
AACCGCAAGC TGGTCTGGTG GAACGGCGCG AAGTGGGTCG GGCACGACGT GCCGGACTTC
AAGATCGACT CGAAGCCCGA GGAGGGCATG TCGCCCTTCA TCATGAACCC GGAGGGCATG
GGCCGGCTGT TCGCGCTCGA CAAGATGGCC GAGGGGCCGT TCCCCGAGCA CTACGAGCCG
TTCGAGTCGC CGGCGGCGTC GAACGCGATG CACCCGAAGG TCGGGCCGAA CCCGGCCGCG
CGCATCTTCC CCGGCGACAA GGCGCAGCTC GGGCTGCCGG GTGAGTTCCC GTACGCCGCG
ACCACCTACC GCGTGGTGGA GCACTTCCAC TTCTGGACCA AGCACGCGCG GATCCCGTCG
GTGCTCCAGC CCGAGCTGTT CATCGAGCTG GACGAGGTGC TCGCCGGCAA GAAGGGCATC
CGCAGCGGCG ACGCCGTCGC GGTCCGCTCG AAGCGCGGCC GCATCGTGGG CAAGGCCGTG
GTCACCAAGC GCATCAAGCC CCTGAAGATC GCGGGCCAGG AGGTCCACAC CGTCGGGATC
CCCATCCACT GGGGGTTCAA CGGGCTCACC AAGCCCGGCT ACATCTCGAA CACCCTCACC
CCCTTCGTCG GCGACGCGAA CACCCAGACG CCCGAGTTCA AGGCGTTCCT GGTGGACGTG
GAGAAGGCCG CGGCGGGGCA GGTCTAG
|
|---|
| Protein sequence | MSVTRRQFLQ LTAAGVGSTG LVALGFSPDR VLADVRNFKL SRTAETRNTC PYCSVGCGVI
LYTLGDRSKN AHSAVMHVEG DPDHPVNRGT LCPKGASLLD FVQSPNRLRY PEYRAPGSDK
WERVTWDWAL DRIARLMKDD RDKNFVAKNA AGVTVNRWPT VGLLAASASS NETGYITHKV
WRALGGVAID NQARVUHGPT VAGLAPTFGR GAMTNSWVDI KNANLVLVMG GNPAEAHPCG
FKWVVEAKAH NKAQLIVVDP RFTRTAAVAD VFAQIRPGTD IAFLGGVIRH LLEKDAIQKQ
YVTAYTNASL IVKEGYGFQD GLFSGYDEAK HTYDKSTWSY ETGPDGFARS DPTLQDPRCV
YQLMKKHYAR YTPKMVADIT GVPEAAFTRI CDAIATTSAP DRTMTALYAL GWTQHSVGSQ
NIRCIAMIQL LLGNVGMAGG GVNALRGHSN IQGLTDLGLL SDLLPGYLTV PRDADTDVET
YLAKRTPKPL RPGQMNYWQN YPKFYASLMK AWYGKAATKE NGWAYDYLPK LDKVYDILAV
FDLMHQGKVN GYLCQGFNPL ASIPNKPKLL ESLSKLKFLV TIDPLVTETS NFWQNHGDLN
PVESAKIQTE VFRLPSSCFA EEDGSLVNSG RTLQWHWKAA EPPGEAKGDP EIVAALFTRI
RALYEKEGGA FADPIRDLTW DYKIPRAPSA EELAREFNGK ALADVKDPKA DPKDPKAPLL
AKEGEQLATF AHLQDDGSTA SGNWLYCGSF TQAGNQMARR DVSDPSGLGV TPSWGWSWPA
NRRVLYNRAS CDPSGKPWDK NRKLVWWNGA KWVGHDVPDF KIDSKPEEGM SPFIMNPEGM
GRLFALDKMA EGPFPEHYEP FESPAASNAM HPKVGPNPAA RIFPGDKAQL GLPGEFPYAA
TTYRVVEHFH FWTKHARIPS VLQPELFIEL DEVLAGKKGI RSGDAVAVRS KRGRIVGKAV
VTKRIKPLKI AGQEVHTVGI PIHWGFNGLT KPGYISNTLT PFVGDANTQT PEFKAFLVDV
EKAAAGQV
|
|---|
| |