| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan7425_5004 |
|---|
| Symbol | |
|---|
| ID | 7290957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7425 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011884 |
|---|
| Strand | - |
|---|
| Start bp | 5092285 |
|---|
| End bp | 5094384 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643587964 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_002485662 |
|---|
| Protein GI | 220910351 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAGTC CCACTGGTCT TGCTCCCCAG GAGCGCCAGG AACTAGAGCA ATTGCGGGCC
GATCGCCAGG TGCAGGCTCA AGTGCAGGCG GAAGCCAACC GGATTTTTAC CAACACCGTT
ACCCTCTTCA ATGCCCTCCT GGCCACGCTG GCTCTGCTGT TGGGGGCGGC GATCGCGGCG
TTAATTCTAC TGCGGCGGGC GGTGATCCGG GAGGTGGCGG AACTGGTCAA AACCCAGTTA
AATCAAATGG CTGATCTGGA AGGACAACTG GAACAGAGCC AGGCAGACAT TGAAGCCCTC
TTGCGCCAGG CAGAAGGGAC CACCGACCAG CTAGGGGAAG AAGCAGAAAA TTTTCAGACT
GAAGTTGAGC AGCAGCGTCA AACCATAACC GGCCTGGTCG CATCCGTCGA TCGACTCAAA
CAGGAACAGG TGACGACCTG GACGAAGGAG CAGGAAGCGG CCCGGCAGCA ATTACAAACT
GCGATCGCTA GTTTTAATAC GGATCTGCAT CAGTTACAGG ACAATCTTCA GAGTCGCAAA
ACCCAAATTG AGCAAGGTCT GGCTAGAGCG CAAACCGAAT TTGCCACCCG GCTCGATCAA
CTCCAGAAGG AAACCCAAAC CAAACATAGT GAGATTCGCC AGTACCTGGA ATCCCTACCG
ACTCAGATGA TCCCGCAACT GGAAGAATTG CGCCAGGCGG CTCAGCATCA ACTTCAGCAA
CAACAGCAAC AGACCCTGGA AACCTTACAA AAGCTGGAAC GGGAGTTTAG TGGTCAATTG
TCCCGGCTGC AGTCGGCGGC CCAGAATCAA CAGGAAGCCA CTGAGCAAAC CCTGTCCAGT
CTGCAAGCCC AATTAACGGC CCAAACGAAT GAGCTACAAA CGGCAGCAGA TCAGCAACGC
CAACGCTTCC TCACCGTTGT CCAGGCGGCT GAAACGGAAC TGAACCAGCA ACTGGCCGAG
TTAAAAACTG AGGTCCAACT GCAACGGGAA CGCATGCGGC AGGGGGTGGA AAAGCTGGAA
ACCCGCCTTG GCGATCGACT CAACCAGGTC GAAACTGATT TAGAAACCCG TCAGAATCTC
AGCCTGGAGG AGCTGCAACG CCGGGAAGCT GGATTTTTAG AGCAATTGCA ACAGCTACAA
GCTCAGAGTC GCCAACAGCA GGAGATGCTG GAGAAACGGC TGGAAGCCAT TACTACGGCC
GCAGAAGGGG AACGAATCAA CCTACGTCAA CGGCTGGAAG ACATGGTGGC ACAGTCCGAA
GCTGAAAAAG CAGTGATTTT AAAAAATCTG ACCGAACTCA GCCCTGAGGC GATCGCCGCC
CTGTTGACCA CCAACCTGAA TGAGCGCTTA ACTTTTCTGA CCGAACAACT GCAACGACTA
CAAACGAATC AGCCGGAATT GTTCTTTACC GCAGCAGACT ATCTCCAGCA GGCCGAGGCT
CTGGTCGCGC AAGGACGGCA TAGAGAGGCG ATCGCGGCCT ACGATCAAGC GCTAGACTTA
CAACCGGATT CTGCCACAAC CTGGTATCAA CGGGGAAATT TACGCCGCAA AATTCAGCAG
TACGAGGCTG CCGTCAAGGA TTACGATCGG GCCCTGGACC TTCGGCCTGA CTATCCCGAA
GCCTGGTGCG ATCGCGGGGT AGCCCTGGGG ATTATGCAGC AACATGAAGC CGCCTTTCAG
TCCTTTGATC AGGCTGTCAA AATTGAACCG ACGGATCAGG TGGCCTGGCT GAACCGGGGG
CTGGCCTTGC AGGAGTTAGA ACGTTACGAA GACGCGATCG CTTCCTTTGA CAAAGTAATT
GAATTGAACC CTAAAGCCCA TAAAGCCTGG AATAACCGGG GCTATGCGCT GGTCAAGCTG
GGTTACGACG AAGATGCCCT GGAAAGTTTT GATCAAGCCC TGACCCTTGA TCCCGATTAT
GGCGCTGCCT ACTACAATAA AGCGATCTGC TATGCCCTCC AGGGGCAGGT CAAACCGGCG
TTGGAAAACC TGCAGGCGGC CGTGGAGCTG AACCCAACTT ATCGGCAGGA GGCGGCCGTG
GAGCCCGATT TTGATGAACT GGCCCGCGAT CGGCGCTTCC AGCGGTTAAT TGCTCAATAA
|
|---|
| Protein sequence | MGSPTGLAPQ ERQELEQLRA DRQVQAQVQA EANRIFTNTV TLFNALLATL ALLLGAAIAA
LILLRRAVIR EVAELVKTQL NQMADLEGQL EQSQADIEAL LRQAEGTTDQ LGEEAENFQT
EVEQQRQTIT GLVASVDRLK QEQVTTWTKE QEAARQQLQT AIASFNTDLH QLQDNLQSRK
TQIEQGLARA QTEFATRLDQ LQKETQTKHS EIRQYLESLP TQMIPQLEEL RQAAQHQLQQ
QQQQTLETLQ KLEREFSGQL SRLQSAAQNQ QEATEQTLSS LQAQLTAQTN ELQTAADQQR
QRFLTVVQAA ETELNQQLAE LKTEVQLQRE RMRQGVEKLE TRLGDRLNQV ETDLETRQNL
SLEELQRREA GFLEQLQQLQ AQSRQQQEML EKRLEAITTA AEGERINLRQ RLEDMVAQSE
AEKAVILKNL TELSPEAIAA LLTTNLNERL TFLTEQLQRL QTNQPELFFT AADYLQQAEA
LVAQGRHREA IAAYDQALDL QPDSATTWYQ RGNLRRKIQQ YEAAVKDYDR ALDLRPDYPE
AWCDRGVALG IMQQHEAAFQ SFDQAVKIEP TDQVAWLNRG LALQELERYE DAIASFDKVI
ELNPKAHKAW NNRGYALVKL GYDEDALESF DQALTLDPDY GAAYYNKAIC YALQGQVKPA
LENLQAAVEL NPTYRQEAAV EPDFDELARD RRFQRLIAQ
|
|---|
| |