| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan7425_4508 |
|---|
| Symbol | |
|---|
| ID | 7290461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7425 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011884 |
|---|
| Strand | + |
|---|
| Start bp | 4581943 |
|---|
| End bp | 4584453 |
|---|
| Gene Length | 2511 bp |
|---|
| Protein Length | 836 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 643587480 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_002485179 |
|---|
| Protein GI | 220909868 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0457] FOG: TPR repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.885776 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCCTT CCCCCGGTGT CATGGTTCCT GGGAACGATC GGATGGTTCC TTCACCCGGT
GCTACGGTTC CTGGGAACGA TCGGATGGTT CCTTCACCCG GTGCTACGGT TCCTGGGAAC
GATCGGATGG TTCCTTTACC CGGTGTCATG GTTCCTGGGA ACGATCGCGT GGTTCCTTTA
CCCGGTGTCA TGGTTCCTGG GAACGATCGC ATGGTTCCTT CACCCCGTTA CACCGTTCCT
TTCGGCCCAT CAGTCGTTTT TCAAAGCGTA AGGGGGAGAT TTACTGCTAA AAATATAAAT
ATCGATCGCC TTAGACAAAA TAACCCCATG TCTAACCTGT GGCAGGTTCT CGAACAGTTT
TATCAGACGT ACAGAGATCT GTTTGACTTT ATCAATAAGA ATGCGGTTGC CCTGGTACTT
CCCCTGATTG GACTGGGGTG GTGGTGGAGA CGACAACAAC GGCAGCGGCG AATTGCGACT
GATACGTTTC CGTTTGATGT TGTGCCGCCC CAGTCTGAGA GTGAGGTGGT CAAGGTTGTT
TATGGCAAGA ATGAAGTTCA GCGGTTACCG GATTGGGAAG TCCCCTATCA GCGACGCTCA
AGTAGCGAGA ATACGTTAGA TCGATTAGAG GCGGCTCTGG CAGAAACAGG CTGGCTGTTG
ATTGTGGGTA AGAGTGGATT AGGCAAAACC CGTGAGGCAG CAGAATTAGC TCGATTACTC
AATCAGGAAG GCTGGACGGT GGTGAACCTG CAATCCTCTG GCTGGGTAGA TGTTCGGAGT
AAGTATCCTG AAAATTTACC CAGGCGCAGG CTACTGTTTT TACTGGACGA CCTGAACCAG
CGGATGCAAA TTGGGCTACA GGAGCAAGCA CCAAAGGCAA AAGAGGTGAT TTCTTCTCCC
CTGACTGTTC CCCTGCAAGA ACGATTGCTG AACCTGCTGA AATATTTTGA AGATGCTTTG
TCTCCAGCAG AAGTGCGTGT AATTGCCACC GCCCGAAATG AAGGGGTTCC AGATCAAGGG
GAGCGGTTCA GTGCATGGGA GAAATTGCGC TGGGAGAAGT ATCCGCAGTT CTGGCAAAGG
TTCAGGGTTT ATGAGTTGAA AAAACCAGAA GACGAGGCTG TGGCTGATCT ATTTACTGAC
ACCGTGCCAA GAACGAACTT AACGCCACAA CCAGATTTAT ACGATGACCT GGCCAGGTGT
AACGATGGCA CATTTAGAAA CGTAGTGGAA AATCTACGCC GACTGGAGAA CCGAAAGCTA
CCCTTGAGCC TGCAAAACTT TAGACCTACC TTAAAAGGCA ACTGGGAAGA TAATTACAGG
ATTGCCGTTG GTAAATTTCC TGCTACTCCA TGGATTTTTG ATGCCATTAG GCTGTTGCAA
GACTTTGGAG TTCCCCTCTA CCCATTTACG GTGATTCCTA CGGCCCGAAT GCTGCTATGG
CAAACGTTAA GGCAGAAATC GAGAAGGGAT TTTTGGAAGG CAATCAGCAC ATATCCCCGC
TACTGGCTCA ATATCCCCCA GGCACTTGCC TATCTTGAAG CTAACCAGGG AATTCTAGAA
CCACGGGATG GTCAGATTGC AGCCAAGCCT GACCCTCTTG AACCTGCGGC TTACCATGTT
CAGTACTTAA TTGACCTGCT CCTCCGTCTG GTGGATCAGC ATCCCCAGAA GTTGCAAGCC
TCTCTCCTCA ACATTGCATT CATGTTAGTT GGACAGGGAA ATATCAGAGA TGCTCTCAAT
TGCTTAAATA AACTTCTCAA GTTTGAAACA AACTCCTCTC TTCTATGGTT TGGTCATGGT
ACTGCATTAG GTAAATCAGG GGCTTATAAA GAAGCGATCG CCAGCTATGA CCAAGCATTA
AAGCTCAAGC CTAACGATGA CGTAGCCTGG AATGAACGAG GCAATGCTTT AGAACATCTG
GGACGTTATG AAGAGGCGCT TATTAGCTAT AATCAAGCTC TAAAGTTTAA ACCTGAAGAT
TCAGATACTT TGAGTAATCG CGGTATTGTA CAAGCCAAGT TAGGACAGTA TGAGGACGCA
ATTGCTAGTT TTGATCAGTC CCTAAAAATT AAACCTGATG ATCCTGAGAA TTGGTACAGC
CGTGGTATTG TTCTGGGGAA TCTAGGGCGG TATAAAGAGG CAATTGCTAG TTATGACAAA
GCCATAGAAA TAAATCCTGA ATATTCTGAC GCTTGGATCA ACAGAAGTGC TTCTTTAGGC
GATCTAAAAC TGTTCAATCA GGCGATTGCT AGCTGTGACC AAGCCCTTAA ATATAAACCT
GATTCTCACC TTGCCTTATT CAATAAAGCT TGTTTTCATG CCATTCAAGG AGAGGTTGAA
CTGACACTTA AAAATTTACA AAAGGCAGTA GCTATATCTG CTGAAGTGCG TCAATTGGCA
AAAATAGACT CATATTTTGA TTCCATCAGG CAAGACCCCA GATTTCAGGC ACTTATTAAC
CCTGAACCTA TACCCCCATC TGAAGAGTTT CCAGGGCAAG AACGCTTCTG A
|
|---|
| Protein sequence | MVPSPGVMVP GNDRMVPSPG ATVPGNDRMV PSPGATVPGN DRMVPLPGVM VPGNDRVVPL
PGVMVPGNDR MVPSPRYTVP FGPSVVFQSV RGRFTAKNIN IDRLRQNNPM SNLWQVLEQF
YQTYRDLFDF INKNAVALVL PLIGLGWWWR RQQRQRRIAT DTFPFDVVPP QSESEVVKVV
YGKNEVQRLP DWEVPYQRRS SSENTLDRLE AALAETGWLL IVGKSGLGKT REAAELARLL
NQEGWTVVNL QSSGWVDVRS KYPENLPRRR LLFLLDDLNQ RMQIGLQEQA PKAKEVISSP
LTVPLQERLL NLLKYFEDAL SPAEVRVIAT ARNEGVPDQG ERFSAWEKLR WEKYPQFWQR
FRVYELKKPE DEAVADLFTD TVPRTNLTPQ PDLYDDLARC NDGTFRNVVE NLRRLENRKL
PLSLQNFRPT LKGNWEDNYR IAVGKFPATP WIFDAIRLLQ DFGVPLYPFT VIPTARMLLW
QTLRQKSRRD FWKAISTYPR YWLNIPQALA YLEANQGILE PRDGQIAAKP DPLEPAAYHV
QYLIDLLLRL VDQHPQKLQA SLLNIAFMLV GQGNIRDALN CLNKLLKFET NSSLLWFGHG
TALGKSGAYK EAIASYDQAL KLKPNDDVAW NERGNALEHL GRYEEALISY NQALKFKPED
SDTLSNRGIV QAKLGQYEDA IASFDQSLKI KPDDPENWYS RGIVLGNLGR YKEAIASYDK
AIEINPEYSD AWINRSASLG DLKLFNQAIA SCDQALKYKP DSHLALFNKA CFHAIQGEVE
LTLKNLQKAV AISAEVRQLA KIDSYFDSIR QDPRFQALIN PEPIPPSEEF PGQERF
|
|---|
| |