| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan7425_3656 |
|---|
| Symbol | trmE |
|---|
| ID | 7289600 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7425 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011884 |
|---|
| Strand | - |
|---|
| Start bp | 3630736 |
|---|
| End bp | 3632118 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643586631 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_002484337 |
|---|
| Protein GI | 220909026 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAACC CAGGTCAAAC GATCGCCGCC ATTGCCACTG CGATTGTGCC CCAACAGGGG
AGTATTGCAA TCGTTCGTTT ATCCGGATCA GAGGCCGTTG CGATCGCCCA GCGGTTATTT
ATTGCACCGG GACAGCAGGT TTGGGAGAGC CATCGTATTC TTTACGGTTA TGTCTGCAAT
CCCAGGACGG GGCAACGGGT GGATGAAGCC CTGTTATTGC TGATGCTGGC CCCCCGTTCC
TACACAAAAG AAGATGTGGT GGAGTTTCAC TGTCATGGGG GCATGATTGC AGTGCAGCAG
GTGTTGCAAT TGTGTCTGGA AGCCGGAGCG GTGCTGGCCC AACCGGGAGA GTTTACCCTG
CGTGCTTTTT TGCATGGCCG CCTCGATCTG ACTCAGGCTG AGAGTGTAGC GGATCTGGTG
GGGGCCAAGT CTCCCCAGGC GGCTCAAGCA GCTTTAGCGG GACTGCAAGG AAAACTGATT
CAACCCCTGC AACAATTACG ACGGACCTGC ATTGATATTC TGGCGGAGAT TGAAGCCCGC
ATTGATTTTG AAGAAGACCT TCCCCCGTTG GACCTGAATC AGATTAGCAG TCAAATTCAA
CATAGCCTGA CGGAAGTGAA CCGGATTTTA GCCACTGCCG ATCGGGGGGA ACTCCTGCGC
ACGGGACTCA AAGTTGCCAT TGTCGGCCGT CCCAATGTCG GAAAATCCAG TCTCCTCAAT
GCCTGGAGTC GCAGCGATCG GGCGATTGTG ACTGAGCTAC CCGGCACCAC CCGTGATGTC
GTGGAATCCT ATTTAGTTGT GGGTGGCATT CCTGTACAGG TGCTAGATAC AGCTGGGATC
AGAGAAACAA GCGATCAGGT CGAACAGATT GGAGTCGAAC GATCGCACAA AGCAGCCCAA
GCCGCCGATT TAGTGCTCCT GGTGATTGAT GCCCAAACGG GATGGACAGC GGAGGATCAA
GCCATCTATA CCCAGGTGCA GGAGCGGTCT TTAATTTTAG TGATTAATAA AATTGATCTA
GTCGATCAGG CATTTCAACC CCAGGCTTGT CTACCAGATC CAGCCCTGAC CTATCTCTGT
ACGGCCGCCG CCCAGAATCA GGGCATTGAG GACTTAGAAT CCGCCATTCT GAGCAAGGTG
CAGGGGGGCG AACTGGAGGG GGCCAATCTG GATTGGGCAA TCAACCAGCG TCAGGCGGCA
GCTCTTACCC GAGCCAAACT GAGTCTGGAA AATGTCCAGG AGACGATCGC CAACCAGTTG
CCCTTAGACT TCTGGACGAT CGACCTGCGG GAAGCGATCC GGGCATTGGG GGAAATTACC
GGTGAGGAAG TCACGGAATC TGTTTTAGAT CAAATTTTCA GTCGCTTCTG CATTGGTAAA
TAA
|
|---|
| Protein sequence | MLNPGQTIAA IATAIVPQQG SIAIVRLSGS EAVAIAQRLF IAPGQQVWES HRILYGYVCN
PRTGQRVDEA LLLLMLAPRS YTKEDVVEFH CHGGMIAVQQ VLQLCLEAGA VLAQPGEFTL
RAFLHGRLDL TQAESVADLV GAKSPQAAQA ALAGLQGKLI QPLQQLRRTC IDILAEIEAR
IDFEEDLPPL DLNQISSQIQ HSLTEVNRIL ATADRGELLR TGLKVAIVGR PNVGKSSLLN
AWSRSDRAIV TELPGTTRDV VESYLVVGGI PVQVLDTAGI RETSDQVEQI GVERSHKAAQ
AADLVLLVID AQTGWTAEDQ AIYTQVQERS LILVINKIDL VDQAFQPQAC LPDPALTYLC
TAAAQNQGIE DLESAILSKV QGGELEGANL DWAINQRQAA ALTRAKLSLE NVQETIANQL
PLDFWTIDLR EAIRALGEIT GEEVTESVLD QIFSRFCIGK
|
|---|
| |