| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan7425_1716 |
|---|
| Symbol | |
|---|
| ID | 7287640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7425 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011884 |
|---|
| Strand | + |
|---|
| Start bp | 1555080 |
|---|
| End bp | 1556870 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643584716 |
|---|
| Product | GTP-binding protein TypA |
|---|
| Protein accession | YP_002482446 |
|---|
| Protein GI | 220907135 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0151298 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00768442 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTCC CGATTCGCAA TGTAGCGATC ATCGCCCACG TTGACCACGG CAAAACCACT
CTGGTTGATG CGCTCTTAAA ACAGGCTGGT ACATTCCGTG AAGGCGAGGA CGTTCCCACC
TGCGTGATGG ACTCTAATGA CCTGGAACGG GAGCGGGGAA TTACAATTCT GGCTAAAAAT
ACTGCGGTCA AATACAAAGA GACACTGATT AATATCGTCG ATACGCCCGG CCACGCTGAC
TTTGGTGGTG AAGTGGAGCG GGTACTCGGC ATGGTGGAAG GCTGCTTGCT GATTGTGGAT
GCCAATGAAG GGCCGATGCC CCAGACTCGA TTTGTGCTCA AGAAGGCGTT AGAAAAGGGC
TTGCGGCCGA TCGTGCTGGT GAACAAAATC GATCGACCCC AGGCTGACCC TTACCGGGCG
ATCGATAAAG TTTTAGACCT GTTCATCGAA CTGGGGGCTG ACGACGACCA GTGTGAGTTC
CCCTACTTAT TTGCTTCCGG CCTGCAGGGT TACGCCAAAA CCGACCTGGA TGAGGAAGGC
GTGGATATGC AACCCCTGTT TGATGCCTTT CTCCGTCACA TTCCACCCCC CGTTGGTGAC
CCCAATCGCC CCTTGCAACT GCAGGTGACC ACCCTGGACT ACTCAGAATA TCTGGGTCGG
ATCGTGATCG GTAAGATCCA CAACGGCACG ATCAAAATGG GGCAGCCCGC CGCTCTGATC
AAAGACACCG GAGAGATTGC GAAGGGTAAA ATTACCAAAC TGCTGGGTTT TGAAGGCTTG
AAGCGCGTAG AGATGGAAAC GGCTTCGGCG GGAAATATTG TGGCGATCGC CGGGTTTGCC
GATGCCAACA TTGGGGAAAC GATCACCTGT CCGAACGAAC CCCAGGCCCT ACCCCTGATC
AAGGTGGATG AACCAACCCT GCAGATGACC TTTTCCGTCA ATGACTCCCC CTTTGCCGGT
CAGGAAGGCG ATTTTGTTAC CTCTCGCCAG ATTCGTGATC GACTGATGCG GGAACTGGAA
ACCAACGTGG CGCTACGGGT GGAAGAAACC GATTCTCCCG ATCGTTTTGC CGTTTCTGGT
CGGGGTGAAC TGCACCTGGG TATCTTGATT GAAACCATGC GGCGGGAAGG CTATGAATTT
CAGGTCTCCC AACCTCAGGT GATCTATCGG GAAGTGAACG GTCAACCCTG TGAACCCTAC
GAATGCCTGG TCCTGGATGT CCCCGAAGAT GCGGCCGGTG GTTGTATTGA ACGATTGGGG
CAGCGACGGG GTGAAATGCA GGATATGCAG GTCAGTAATG GCCGCACCCA GTTGGAGTTT
GTGATTCCGG CTCGTGGTCT GGTGGGCTTC CGGGGTGAAT TTATGCGGCT CACCCGTGGG
GAAGGGATTA TGAACCACAG CTTTCTGGAT TACCGTCCTT TGGCTGGCGA AATTGGTACC
CGGCGCAATG GCGTGTTGAT TTCCTTTGAA GAGGGTGTTG CCACCTTCTA TGCGATGAAA
AATGCTGAAG ATCGGGGGGC GTTCTTCATT ACTCCCGGTA CGAAGGTTTA CAAAGGCATG
ATTGTGGGTG AACACAACCG GCCTCAGGAT CTGGAAATTA ACGTTTGCAA AACGAAGCAG
TTGACTAACC ACCGCAGTGC CACTGGCGAT GAACTGGTGC AGCTCCAAAC TCCGATCGAC
ATGAGCCTAG AACGGGCCCT GGAATACATT GGCTCCGATG AACTGGTGGA AGTCACCCCA
GAATCTGTGC GGCTACGGAA AGTGGCGATG AAGAAACTGG CTAAACGCTA A
|
|---|
| Protein sequence | MTLPIRNVAI IAHVDHGKTT LVDALLKQAG TFREGEDVPT CVMDSNDLER ERGITILAKN
TAVKYKETLI NIVDTPGHAD FGGEVERVLG MVEGCLLIVD ANEGPMPQTR FVLKKALEKG
LRPIVLVNKI DRPQADPYRA IDKVLDLFIE LGADDDQCEF PYLFASGLQG YAKTDLDEEG
VDMQPLFDAF LRHIPPPVGD PNRPLQLQVT TLDYSEYLGR IVIGKIHNGT IKMGQPAALI
KDTGEIAKGK ITKLLGFEGL KRVEMETASA GNIVAIAGFA DANIGETITC PNEPQALPLI
KVDEPTLQMT FSVNDSPFAG QEGDFVTSRQ IRDRLMRELE TNVALRVEET DSPDRFAVSG
RGELHLGILI ETMRREGYEF QVSQPQVIYR EVNGQPCEPY ECLVLDVPED AAGGCIERLG
QRRGEMQDMQ VSNGRTQLEF VIPARGLVGF RGEFMRLTRG EGIMNHSFLD YRPLAGEIGT
RRNGVLISFE EGVATFYAMK NAEDRGAFFI TPGTKVYKGM IVGEHNRPQD LEINVCKTKQ
LTNHRSATGD ELVQLQTPID MSLERALEYI GSDELVEVTP ESVRLRKVAM KKLAKR
|
|---|
| |