| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan7425_1673 |
|---|
| Symbol | |
|---|
| ID | 7287596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7425 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011884 |
|---|
| Strand | + |
|---|
| Start bp | 1518728 |
|---|
| End bp | 1519684 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643584672 |
|---|
| Product | RNA polymerase sigma factor SigD |
|---|
| Protein accession | YP_002482403 |
|---|
| Protein GI | 220907092 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCG CTGAAACCTC TAAGGATTTA GTTCGTGCTT ACTTACGTGA AATCGGCCGT
GTTCCCCTGT TGACCCATGA ACAGGAAATT CTTTACGGTA AGCAAGTTCA GCAATTAGCC
ATTGTGCAGC AGGTGCGTGA GGAACTGAGC GATCGCCTCG GCCACGAACC CGATCTGACG
GAATGGGCAA CAGCGGCCAA GTTATCTGAA GCTGAACTCC AGGGGGTGGT CAACCGGGGT
GAACTGGCCA AGCGCAAGAT GGTGGAGGCA AATTTACGCC TGGTTGTTTC TGTTGCCAAA
AAATATATCA AGCGCAATGT CGATCTGCTC GATCTGATCC AGGAAGGGAC GATCGGGATG
CAACGGGGTG TGGAGAAATT TGATCCGACC AAGGGCTACC GCTTCAGTAC CTACGCCTAC
TGGTGGATTC GACAGGCAAT TACGCGGGCG ATCGCAGAAA AAGGACGGAC CATTCGCCTT
CCCATTCACA TTACTGAAAA GCTGAACAAG ATTAAGAAAG CTCAGCGGCA ACTCTCCCAG
CAATTAGGCC GAGCTGCAAC CATCGGCGAA CTGGCCCAGG AATTGGAACT GACCCCCAAA
CAGGTGCGGG AATATCTGGA GCGATCGCGT CAACCCCTTT CCTTAGATGT GCGGGTGGGG
GACAACCAGG ATACAGAACT GGGAGAGTTA CTCGAAGATA CAGCGGCCTC GCCAGAGGAT
TTTACCTCTC AAGCTTCTCT GCGGGCTGAT CTAGATCGGT TAATGGCAGA TTTAACCCCG
CAGCAACGCC AGGTGCTTTC CCTCCGGTTT GGTCTGGAAG ATGGTCAACC CTTAACCCTG
GCTAAGGTGG GGGATATGCT CAATATCAGT CGGGAACGGG TGCGGCAGAT TGAACGGGAA
GCCCTCAGTA AACTACGCAA GCGTAAGGCC GATATCTACG AATATCTAGC CAGCTAA
|
|---|
| Protein sequence | MKTAETSKDL VRAYLREIGR VPLLTHEQEI LYGKQVQQLA IVQQVREELS DRLGHEPDLT
EWATAAKLSE AELQGVVNRG ELAKRKMVEA NLRLVVSVAK KYIKRNVDLL DLIQEGTIGM
QRGVEKFDPT KGYRFSTYAY WWIRQAITRA IAEKGRTIRL PIHITEKLNK IKKAQRQLSQ
QLGRAATIGE LAQELELTPK QVREYLERSR QPLSLDVRVG DNQDTELGEL LEDTAASPED
FTSQASLRAD LDRLMADLTP QQRQVLSLRF GLEDGQPLTL AKVGDMLNIS RERVRQIERE
ALSKLRKRKA DIYEYLAS
|
|---|
| |