Gene Cyan7425_0488 details

Gene Information

• Locus tag: Cyan7425_0488
• Symbol: rpoB
• ID: 7286397
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cyanothece sp. PCC 7425
• Kingdom: Bacteria
• Replicon accession: NC_011884
• Strand: -
• Start bp: 288567
• End bp: 291866
• Gene Length: 3300 bp
• Protein Length: 1099 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 643583496
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_002481241
• Protein GI: 220905930
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 20
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACTAATA CGATTTATAC CCCACCCGCC TTTACTCTCC CTGACCTGGT TGAGATTCAG 
CGGGAGAGCT TCCGTTGGTT CCTGGAAGAA GGATTAATTG AGGAACTCGA AAGTTTTTCA 
CCTATTACTG ACTATACAGG CAAAATTGAA CTACACATCC TGGCGAAGGA CTATAAGCTC 
AAGCGTCCCA AGTACAGCGT CGATGAAGCC AAGCGCCGAG ACAGCACCTA TGCTGTGCAA 
ATGTACGTTC CGACGCGTCT GATCAATAAA GAAACTGGGG AAATTAAAGA GCAGGACGTT 
TTCATCGGTG ATCTTCCCCT CATGACCGAT CGGGGCACCT TCATTATCAA CGGTGCTGAA 
CGGGTGATCG TCAACCAGAT CGTCCGTAGC CCTGGGGTGT ATTACAAGTC AGAAGTCGAT 
AAAAATGGTC GGCGCACTTA CAATGCCAGC CTGATTCCCA ACCGGGGAGC CTGGTTAAAG 
TTTGAAACTG ACAAAAATGA CCTGGTTTGG GTGCGGATTG ATAAAACCCG TAAACTGTCT 
GCTCAGGTTT TACTGAAGGC TCTGGGGCTG AGTGATGCAG AAATTTTTGA CCGACTGCGC 
CACCCCGAAT ACTACCAAAA AACGATCGAC AAGGAAGGGC AGTTCAACGA AGAAGATGCC 
CTGATGGAGC TTTACCGCAA ATTGCGTCCC GGTGAACCTC CCACGGTGTC TGGGGGGCAG 
CAATTGCTAG ACTCCCGCTT TTTTGACCCT AAACGCTACG ACCTGGGCCG GGTGGGTCGT 
TACAAGCTGA ACAAGAAATT GCGGCTGAAT GTCCCCGAAA CCACGCGGGT ACTCACCTCT 
GAAGATATTC TGGCGGCGAT CGACTACCTG ATCAACCTGG AATACGACAT CGGCATGATT 
GACGACATTG ACCACCTGGG TAACCGCCGG GTGCGCTCTG TCGGTGAACT GCTGCAAAAT 
CAGGTGCGGG TGGGCTTAAA TCGGTTAGAG CGGATTATTC GGGAGCGTAT GACGGTTTCC 
GATACGGATG CCCTCACCCC TGCTTCTCTG GTCAACCCCA AACCCCTGGT CGCTGCGATC 
AAAGAATTCT TTGGCTCCAG CCAGTTGTCC CAGTTCATGG ATCAAACCAA TCCGCTGGCA 
GAATTGACTC ACAAACGTCG TCTCAGTGCG CTTGGTCCTG GCGGTCTGAC GCGGGAACGG 
GCAGGCTTTG CGGTACGGGA TATTCACCCC AGCCATTATG GGCGGATCTG TCCGATTGAA 
ACCCCAGAAG GTCCCAACGC TGGCTTGATC GGCTCTCTGG CAACCCATGC TCGCGTCAAC 
GAGTACGGCT TTATTGAAAC CCCTTTCTAT CCGGTTAAAG ATGGACGGGT GCTCAAGGAT 
CAAGCCCCGG TTTACATGAC TGCGGATGAA GAAGATGACA AACGGGTAGC TCCTGGGGAT 
GTTTCCACCG ATGCCGATGG CCATATTCTC GGTGAAGTGG TACCTGTGCG CTATCGACGG 
GACTTTACCA CCACCACCCC GGATCAGGTG GATTTTGTCG CCGTTTCCCC GGTGCAGATT 
ATCTCTGTTG CCACCTCTCT GATTCCCTTC CTGGAGCACG ACGATGCCAA CCGGGCCCTG 
ATGGGTTCCA ACATGCAACG GCAGGCCGTA CCTCTACTGC GTCCCCACCG TCCTCTCGTT 
GGAACGGGCT TGGAAGCTCA GGCAGCGCGT GACTCCGGCA TGGTGGTGAC TACCCGATCG 
GATGGAGAAG TGAGCTATGT TTCAGCGGAT GTAATTCGAG TTCGCGCTAC TCAGGGGCAT 
GAAATTGAAT ATCCGTTGCA AAAATACCAG CGATCGAACC AGGATACCTG TCTGAACCAG 
CGCCCGATCG TCTTTGCCGG TGACAAGGTC ACAGCCGGCC AGGTCATTGC TGACGGTTCT 
GCTACCGAAG GCGGTGAACT TGCCCTGGGT CAGAACGTCC TGATCGCTTA TATGCCCTGG 
GAAGGCTACA ACTACGAAGA TGCCATTCTG ATCAGTGAGC GTCTGGTCTA CGATGATGTC 
TACACCTCAA TCCACGTGGA AAAATATGAG ATTGAGGCCC GGCAGACCAA ACTAGGACCA 
GAAGAAATTA CACGGGAAAT TCCCAACGTT GGGGAAGATG CCCTGCGCCA ACTGAACGAA 
AACGGCATTA TCCGGACTGG AGCCTGGGTG GAAGCTGGAG ACATTCTGGT CGGCAAAGTG 
ACCCCCAAAG GGGAATCAGA TCAGCCTCCG GAAGAAAAAT TGCTGCGAGC GATCTTCGGT 
GAAAAGGCCC GGGACGTGCG GGATAACTCC CTACGAGTGC CCAACGGTGA AAAAGGCCGG 
GTGGTGGATG TGCGGGTGTT TACCCGGGAA CAGGGGGATG AACTACCACC GGGAGCCAAC 
ATGGTGGTGC GAGTCTACGT CGCCCAAAAA CGCAAGATCC AGGTTGGGGA CAAGATGGCG 
GGTCGCCACG GTAATAAGGG GATTATCTCC AGGATTCTGC CCCAGGAAGA TATGCCCTAC 
CTGCCAGATG GCACGCCCGT CGATGTGGTG TTGAACCCCC TGGGGGTACC CTCGCGGATG 
AATGTCGGCC AGGTGTTCGA GTGTTTGCTC GGTTGGGCCG GTTATCATCT GGGAGCCCGG 
TTTAAGATCA CGCCCTTTGA TGAAATGCAC GGGGCCGAAG CCTCTCGCCT CACTGTTCAC 
GGCAAGCTGG ATGAAGCCAA AGAACTCACC GGGCGGGATT GGGTGTTTGA TCCAGACAAT 
CCTGGTAAAA CTCAAATTTT TGATGGTCGT ACGGGAGAAG CTTTCGATCG CCCGGTCACG 
GTTGGCAAAG CCTACATGCT CAAACTCGTC CACCTGGTAG ATGACAAGAT CCATGCCCGT 
TCAACTGGTC CCTACTCGCT GGTGACTCAG CAACCTCTGG GTGGTAAAGC CCAACAGGGG 
GGTCAGCGGT TCGGAGAAAT GGAAGTCTGG GCCCTGGAAG CCTACGGAGC TGCCTACACC 
CTGCAGGAAC TGCTAACGGT GAAATCCGAT GATATGCAGG GTCGCAACGA AGCGCTCAAT 
GCGATCGTCA AAGGTCAGGC CATTCCCCGC CCCGGCACAC CCGAGTCCTT TAAGGTGCTG 
ATGCGAGAGT TGCAATCCCT CTGTCTGGAT ATTGGGGTAC ACAAAGTTGA AGCTACGGAA 
GATGGTAGCA ACCGGGATGT GGAAGTGGAT TTGATGGCCG ATGTCAACAA TCGCCGTACC 
CCCTCCCGTC CCACCTACGA ATCCTTCTCC AGAGCTGATA TGGAGGATGG AGATTTTTAA 

 

Protein sequence

MTNTIYTPPA FTLPDLVEIQ RESFRWFLEE GLIEELESFS PITDYTGKIE LHILAKDYKL 
KRPKYSVDEA KRRDSTYAVQ MYVPTRLINK ETGEIKEQDV FIGDLPLMTD RGTFIINGAE 
RVIVNQIVRS PGVYYKSEVD KNGRRTYNAS LIPNRGAWLK FETDKNDLVW VRIDKTRKLS 
AQVLLKALGL SDAEIFDRLR HPEYYQKTID KEGQFNEEDA LMELYRKLRP GEPPTVSGGQ 
QLLDSRFFDP KRYDLGRVGR YKLNKKLRLN VPETTRVLTS EDILAAIDYL INLEYDIGMI 
DDIDHLGNRR VRSVGELLQN QVRVGLNRLE RIIRERMTVS DTDALTPASL VNPKPLVAAI 
KEFFGSSQLS QFMDQTNPLA ELTHKRRLSA LGPGGLTRER AGFAVRDIHP SHYGRICPIE 
TPEGPNAGLI GSLATHARVN EYGFIETPFY PVKDGRVLKD QAPVYMTADE EDDKRVAPGD 
VSTDADGHIL GEVVPVRYRR DFTTTTPDQV DFVAVSPVQI ISVATSLIPF LEHDDANRAL 
MGSNMQRQAV PLLRPHRPLV GTGLEAQAAR DSGMVVTTRS DGEVSYVSAD VIRVRATQGH 
EIEYPLQKYQ RSNQDTCLNQ RPIVFAGDKV TAGQVIADGS ATEGGELALG QNVLIAYMPW 
EGYNYEDAIL ISERLVYDDV YTSIHVEKYE IEARQTKLGP EEITREIPNV GEDALRQLNE 
NGIIRTGAWV EAGDILVGKV TPKGESDQPP EEKLLRAIFG EKARDVRDNS LRVPNGEKGR 
VVDVRVFTRE QGDELPPGAN MVVRVYVAQK RKIQVGDKMA GRHGNKGIIS RILPQEDMPY 
LPDGTPVDVV LNPLGVPSRM NVGQVFECLL GWAGYHLGAR FKITPFDEMH GAEASRLTVH 
GKLDEAKELT GRDWVFDPDN PGKTQIFDGR TGEAFDRPVT VGKAYMLKLV HLVDDKIHAR 
STGPYSLVTQ QPLGGKAQQG GQRFGEMEVW ALEAYGAAYT LQELLTVKSD DMQGRNEALN 
AIVKGQAIPR PGTPESFKVL MRELQSLCLD IGVHKVEATE DGSNRDVEVD LMADVNNRRT 
PSRPTYESFS RADMEDGDF