| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_2268 |
|---|
| Symbol | |
|---|
| ID | 7285985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011883 |
|---|
| Strand | + |
|---|
| Start bp | 2729053 |
|---|
| End bp | 2731986 |
|---|
| Gene Length | 2934 bp |
|---|
| Protein Length | 977 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643583090 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_002480841 |
|---|
| Protein GI | 220905529 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAGGA ACTTTCGCGT CCTGAAACTT CTGGCCTGGA TGCTTTTCTG CATTGCACAG
GCTCTCTGGA GTTTGCCGTC CCAGGCTGCC TCCCGCATTG TGCAGGTGGG CATTTTTCCC
ATGGGTGGTT TTCACGATCT GGAAAACGGC CGTCCCGTCG GCTATGACGT TGACTACCTG
GAGCAGGTAA GCAGATACAC CGGATGGCAG GTAAAGTTTG TCAGTTTTGA CACCTGGCAC
GCCGCCCTGA GCGCGCTGGA AAAAGACCAG ATCGATCTTC TTGGCGGCGC GCTGCACACC
CCCGAACGCG CCAGGCGTTT TCTGTATTCT CCATATGCCA GCGGCATCAC CTATACCGCC
CTTGTTGCCT CAAAAGACAC GCCTCTTGTT TACGAAGACT TCAAAAAATT TGAAAGCCTG
CGCATAGGCG TCACCAGCGA CAGCCCCTGG CGGGCAGACT TTATGGCCTA CGCCGCGCGC
AACAACTTTA CCGCGCCGCA GCTTATTCCT TTCAGGCTTG CCAAAGACTC CCGCGATGCA
CTGAAAGCCG GGGGCATCGA CGCCATACTG ACTTCCGTCA TCAGCCTTGA AGCTGACGAA
GCGGTGCTGG CAAAATACGA CCCCAGGCCT TTTTTCTATA TCACCAGCCA CAGTAATGCC
CAGCTCATGA AAGAACTGGA GCACGGCATA GCCCAGTTAA AACTGGAACA GCCCGATCTG
GAAAACAAAC TTTCGCGCAC CCATTTGTGG CGCAGCTACC AGACGCCGCT TACCAAGGCC
GAAAGAGACT TCATACGTTC CTGCCCACCC CTGCGCGTGG GCTACAGCCC CATGCGCAAG
CCCCTGATCT GGCACGATGA AAGCACAGGC GAGACACGGG GCATCCTGCC CGGCATACTT
CGCAAGCTCA GCCGCGCAAG CGGCCTGATT TTCGAATTCG TGCCTATGGA TGATCCGGAC
ATGAGCCTGA ACGACTATTT CAGGCAAGGC AAAATAGACC TGTGTGCCGG CGTAATGTAT
TCCACAATAT GCAACTCCAG CCCCCTGTAT ACGCTGACCT CGCCCGTACT GCGCAGCGGG
CTGAACCTGT ACAGCAAAAA GTTTTCCGAA ATTCCACCCG GCGCTCCGCT GCAAGTCGCC
ATACCCGCCG TCTGGCGCGG CGGGCACGTG TACCTTAATA CCAATTATCC CGCCTTGCGC
GTGGTTTCTT ACCCCGACAT CGAATGCTGC CTTGAAGCCG TAGCAGCAGG CCAGGCAGAC
CTTTTGCTGC AAACCAGCTT TGAAGTGGAC TATCTGCTCG CCAGACCCCG CTTTCGCGAA
ATAGTACCCC TGCAGGAACA CAGCGGTTTT GAAGACAGCC GCCTGGCTGT CAGCGCGGCC
ATGCCGCCGC CTCTGCTGAA CATCCTCAAC AAGCTGCTCA TGAATATCGA CGAAAAAAGC
AAAAGCCAGA TCATTTCTGA AAACATTTCC GCGGTGGCCT CACCCATGAG CCTGTCGGAC
ATGGCCTACG AGCACCGCAC CCTGCTGGCG GCTCTGGGGC AGATGCTGCT TTTCGGCCTG
GCCTTTTTTG CCTACCTTGC CTATCTGCGG CGCAAGAGCG GCAGAACCGT TCAGGAAAGC
GAGCGCCGCC TCACCAATAT GGCAAACAAT ATCAACGGCG GCGTCATCAG CCTCATCAAC
AATCCCCGCC TGGACATCCG CAACGCCAAC AGCGGGTTCT GGCATTTGCT GGGCTATAGC
GACAACCCGC CCCCAAATCC CTGCCTTGCC GACTTTCTGA GTCCCGAAGA GTCAGAGAGC
CTGTTCAGGC TGCTTGAAAG CCGCCGTGAA GAAAATTCTT CCGTCAATAT GGAACTGCAC
CTGCGCCGTA AAAACGGCCA GCCCATGCCG GCCCTGCTGC GCTGCACATG GTCCAGCGAC
GGGCAGGCCA TAGCCCTTCC CAGCCTGGAC TGCGTTGTGG TGGACATTAC AGAACAAAAA
CATATGCAGG AAGAACTGGA ACAGGAAAAA GAGCGTTACC GCATTCTGCT GGAGCAGTCT
CAGGATATTA TTTTTGATAT GGATATGGAA AAAAGGCAGT TCACCTGCTC GCCCAATTTT
TTCACAAAAT TCGGCCGCGA CAGCACCCCC ATGTTCACCC CTGACGGGCG CCCGCGCAAT
GATCAGATAG TACACCCCGA CGACCTGCCA GCCCTTACGG AAATGCGGCG GCGGGTACGG
GCGGGAGAAC GCACTGTTTT CAGCGTGATG CGCATTCCCA CGGCCCAGGG GCGATACATC
TGGTGCAGGG TGCAGACCAC CCGCATCAGC AAAAAAGACG CGCCCCTGCA TATTGTGGGA
AAAATTGTGG ACATTGACGA AGAGGTGCGC CGCAGAGCCG AGCTGGAGCG CCTGTCGCAA
CGCGACAGCC TGACGGATCT TTACAACAAG GTGGCCTTTC GCGAAAAGGT CATGCAGAAC
ATGCCTGTCC GGCCCAAGGG TGACAAGACA CACGCCCTGC TCTTTCTTGA TCTGGACAAC
TTCAAGGAGC TTAACGACAG CCTGGGACAC ATGGCCGGTG ACGTCGCCCT GATCGACGCC
GCGGACGCCC TCAGGCGCAT CTTCCGCAAT GTGGATGCCG TGGGGCGCTT CGGCGGCGAT
GAATTCTGCG TTTTTGCCAT GGGCATCACC CGCAACGCCG TGGCCGCGCG GGCAGAATCC
GTGCTCAAGG CCCTGGCCAT GCATTTCGAC CGCGAGGGAA AAGCCGTGAA CATCAGCGCC
AGCATCGGCA TCTATATGTT TGACGGCAGC GAAAATTCCT ATGAAGAATC CCTCCAGCGG
GCAGACAACG CCCAGTATCG CGCCAAGCAG CTCGGCAAGA ACCGGTACGC CTTCTATGAT
GACCCGCCCG TGGAGCATCC GGAATCAGAA CAGGGCCAGC CATCCAACGC CTGA
|
|---|
| Protein sequence | MRRNFRVLKL LAWMLFCIAQ ALWSLPSQAA SRIVQVGIFP MGGFHDLENG RPVGYDVDYL
EQVSRYTGWQ VKFVSFDTWH AALSALEKDQ IDLLGGALHT PERARRFLYS PYASGITYTA
LVASKDTPLV YEDFKKFESL RIGVTSDSPW RADFMAYAAR NNFTAPQLIP FRLAKDSRDA
LKAGGIDAIL TSVISLEADE AVLAKYDPRP FFYITSHSNA QLMKELEHGI AQLKLEQPDL
ENKLSRTHLW RSYQTPLTKA ERDFIRSCPP LRVGYSPMRK PLIWHDESTG ETRGILPGIL
RKLSRASGLI FEFVPMDDPD MSLNDYFRQG KIDLCAGVMY STICNSSPLY TLTSPVLRSG
LNLYSKKFSE IPPGAPLQVA IPAVWRGGHV YLNTNYPALR VVSYPDIECC LEAVAAGQAD
LLLQTSFEVD YLLARPRFRE IVPLQEHSGF EDSRLAVSAA MPPPLLNILN KLLMNIDEKS
KSQIISENIS AVASPMSLSD MAYEHRTLLA ALGQMLLFGL AFFAYLAYLR RKSGRTVQES
ERRLTNMANN INGGVISLIN NPRLDIRNAN SGFWHLLGYS DNPPPNPCLA DFLSPEESES
LFRLLESRRE ENSSVNMELH LRRKNGQPMP ALLRCTWSSD GQAIALPSLD CVVVDITEQK
HMQEELEQEK ERYRILLEQS QDIIFDMDME KRQFTCSPNF FTKFGRDSTP MFTPDGRPRN
DQIVHPDDLP ALTEMRRRVR AGERTVFSVM RIPTAQGRYI WCRVQTTRIS KKDAPLHIVG
KIVDIDEEVR RRAELERLSQ RDSLTDLYNK VAFREKVMQN MPVRPKGDKT HALLFLDLDN
FKELNDSLGH MAGDVALIDA ADALRRIFRN VDAVGRFGGD EFCVFAMGIT RNAVAARAES
VLKALAMHFD REGKAVNISA SIGIYMFDGS ENSYEESLQR ADNAQYRAKQ LGKNRYAFYD
DPPVEHPESE QGQPSNA
|
|---|
| |