| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_1900 |
|---|
| Symbol | |
|---|
| ID | 7285615 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011883 |
|---|
| Strand | + |
|---|
| Start bp | 2289595 |
|---|
| End bp | 2290260 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643582721 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
|---|
| Protein accession | YP_002480474 |
|---|
| Protein GI | 220905162 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.65867 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTAC TGTTTCCCCA CGGCCTTGCA GGAGTCATCT TTGACTGCGA TGGCGTGATG
ATAGATTCGC GCGAATCCAA CAATATTTTC TACAATCGCG TTCTTGAGCA CTTTGATTTA
CCGCCCATGA CGCCGGAGCA GGAAGAATAC TGCTTTATGG CTACAGCCGT ACAGTCCCTG
CTGCATATTG TGCCGCCGCA CCTTCACGGC CAGATAGAGT ATGTAACACG CGAGGTGGTC
AACTACCGGC GCGACATCTT GCCCATGCTG CGCCTGCAGC CGGGATTTAC CGAATTTATT
GATGACCTTC GCGACCGCCG TGTGCGCATG GCCGTGCATA CCAACCGCAG GTTTGAGGGA
ATACAAACGG TTCTGGACAT TTTCGGCCTG CCCACCTATT TTGATCCTGT GGTCGCGGCC
GATACGGCAG CGCCCAAACC GTCTCCCGAA GGCACACGGC ACATCTGTTC CGCCTGGGGA
GTTTCGCCCG AAACCGTGCT TTTTGTGGGC GACAGCGAAC ATGACAAGGA AGCGGCCCGG
GGGGCGGGCG TAGTATTTGC GGCATTTGGC AGCGGGCCTC TCCGGGGGCA GATAACAGTC
ACGGATTATG CAGGCCTGCA CGCCGCGCTG GACCGGACTT TGCCGCCCCA AAAGGCCGAG
GCGTGA
|
|---|
| Protein sequence | MSVLFPHGLA GVIFDCDGVM IDSRESNNIF YNRVLEHFDL PPMTPEQEEY CFMATAVQSL
LHIVPPHLHG QIEYVTREVV NYRRDILPML RLQPGFTEFI DDLRDRRVRM AVHTNRRFEG
IQTVLDIFGL PTYFDPVVAA DTAAPKPSPE GTRHICSAWG VSPETVLFVG DSEHDKEAAR
GAGVVFAAFG SGPLRGQITV TDYAGLHAAL DRTLPPQKAE A
|
|---|
| |