| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_1587 |
|---|
| Symbol | trpA |
|---|
| ID | 7285285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011883 |
|---|
| Strand | - |
|---|
| Start bp | 1908136 |
|---|
| End bp | 1908903 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643582396 |
|---|
| Product | tryptophan synthase subunit alpha |
|---|
| Protein accession | YP_002480165 |
|---|
| Protein GI | 220904853 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0159] Tryptophan synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000746649 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGC TTGAAGAAAA GATACGTGCG GCCAATGCCG CCGGACGCCC GGCCCTTATC
CCTTTTTTGA CCGCGGGCTT TCCCGATCGC GCAACATTTT GGCCCACATT GATGGAGCTG
GATGAAAACG GAGCGGATAT TATTGAAATA GGCGTGCCGT TTTCCGATCC CGTTGCCGAC
GGCCCGGTGG TGGAAGAGGC TTCGCGGCGG GCGCTCAGCG ACGGGGTAAA CCTGCGCGGC
ATTCTTGCGG AGCTTGCCCA GCGCAAGGGC CTTGTCAAGG CCGGGCTTGT GTTGATGGGA
TATCTGAATC CCTTTTTGCA GTATGGCTAC GAAAAACTGG CGCAGGATGC AGCCCGGGGC
GGTGTGCATG GCTTCATCGT GCCCGACCTG CCCCATGAAG AGTCCGGGCC GCTGCATCGT
GCCCTGAAGA AAGAGGGCAT CGCCCTTATC CCGCTGGTGG GACCCAATAC CAGTGCGGAG
CGCATGGCCC TGTATGCCGA AGAAGGCGAG GGCTATGTGT ATGTGGTTTC GGTTATGGGC
ATTACCGGAG AACGGGGAGA TGTAGCTCCG CAGGTGGCCG ATACCATGCG GCGGGCGCGT
TCTGTCTTCA GCCTTCCCTT GGCTTTAGGC TTCGGTCTGC GTGAGCCGGG GCAGCTCAGG
GAACTTCCGC CGGACGCCAG GCCGGATGCC GCGGTTTTCG GCAGTGCCCT GCTCAACCAC
CTTGAAGAAG GCCACAGCGC CGAAGAGTTT ATGGCCCGCT GGAAATAG
|
|---|
| Protein sequence | MNLLEEKIRA ANAAGRPALI PFLTAGFPDR ATFWPTLMEL DENGADIIEI GVPFSDPVAD
GPVVEEASRR ALSDGVNLRG ILAELAQRKG LVKAGLVLMG YLNPFLQYGY EKLAQDAARG
GVHGFIVPDL PHEESGPLHR ALKKEGIALI PLVGPNTSAE RMALYAEEGE GYVYVVSVMG
ITGERGDVAP QVADTMRRAR SVFSLPLALG FGLREPGQLR ELPPDARPDA AVFGSALLNH
LEEGHSAEEF MARWK
|
|---|
| |