| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_1523 |
|---|
| Symbol | |
|---|
| ID | 7285221 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011883 |
|---|
| Strand | - |
|---|
| Start bp | 1820247 |
|---|
| End bp | 1821536 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643582334 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_002480103 |
|---|
| Protein GI | 220904791 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.112561 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTGT TTATTTTTCT GGGAACTCTC TTTTTCTTTC TTGCTCTTGG CATTCCTATC
GCTCTGGTTC TGGTGCTCTG CGCCATAGTG CTCATGTGGC ACTCCGGCAT GTGGGACGCC
ATGATCATTC CAGGCAGCAT GCTGGACGGG GCCAACAACT ATCCCCTCAT GGCCATTCCC
TTTTTTGTGT TCGCCGGCGA AATCATGTCC GCGGGCGGCC TTTCAAAAAG GGTGGTGCAG
CTGGCCCAGC TCATGATCGG CCGGGTTCGC GGCGGGCTTG GCTATGCGGC CATTATCGCG
AGTATTCTTT TTGCAGGTCT TATGGGCAGC TCTGTTGGCG AAGCCGCGGC TTTGGGCGGG
CTGCTGCTGC CCATGATGAA ACAGGTGGGT TACCATCCGG GCCGCGCCGG GGCTGTTATT
GCCTCGGGCG CCATTCTTGG TCCCATCATT CCGCCGAGCA CCAACTTCAT TCTGCTTGGC
GCCACCATCA GCGGCCTTTC CATTACCAAG CTGTTCATGA TCGGCCTTGT GCCCGGCATC
ATGATCGGTC TGGCACTCAT GGTCGTGTGG TTCTTTGTGG TGCGCATCGA CGGCTACAAC
GAAACCATCA CCTTTACCAG GGCCGAAGCC ATAAAGATTC TCTTTGATGC AACCCCGGCC
TTCATGATGC CGGTGCTGCT GCTGGGCGGT ATCCGTTTCG GGATATTCAC CCCCACTGAG
GGCGGCGCCT TTGCGGCCAT CTACGCCATC GCGGTGTGCA TGCTCTATTA CCGCGAGCTT
TCATTCCGCG ATCTTTTGCG TGTAAGCGCC CGCGCCGCGC ATACCACGTC TGTGGTCATG
CTGGTTGTTG CCGCAGCCAC TGCGGTGGGC TGGTTTATCA CCATTGCGCA GATACCCAAT
CAGATGACAG CGTTGTTTAC CCCCCTGATT GACAATCCCA TTATGCTGCT GCTGGCGATC
AACCTTTTCC TCTTCCTTAT CGGCATGGTC ATGGACCTGA CGCCCAATAT CCTGATCTTT
GCGCCGGTGT TTTACCCGTT GATCCAGCAG GCGGGCATTG ACCCGTATTA CTTCGGGCTG
CTTTTTGTGC TCAACCTCGG TATCGGCGTC ATTACTCCGC CGGTGGGCAC TGTGCTTTAC
GTTGTTTGCG GCATCGGCAA TATCAAAATC ACGCAACTGG TTGTTAAACT GGTTCCCTTC
ATTTTGATAG AAGTCGTTAT GCTGCTCCTG CTGCTTTTCT TCCCCTCCCT GTCGCTTACG
CCCCTCAACT GGCTTATGGG CGGCAACTAG
|
|---|
| Protein sequence | MELFIFLGTL FFFLALGIPI ALVLVLCAIV LMWHSGMWDA MIIPGSMLDG ANNYPLMAIP
FFVFAGEIMS AGGLSKRVVQ LAQLMIGRVR GGLGYAAIIA SILFAGLMGS SVGEAAALGG
LLLPMMKQVG YHPGRAGAVI ASGAILGPII PPSTNFILLG ATISGLSITK LFMIGLVPGI
MIGLALMVVW FFVVRIDGYN ETITFTRAEA IKILFDATPA FMMPVLLLGG IRFGIFTPTE
GGAFAAIYAI AVCMLYYREL SFRDLLRVSA RAAHTTSVVM LVVAAATAVG WFITIAQIPN
QMTALFTPLI DNPIMLLLAI NLFLFLIGMV MDLTPNILIF APVFYPLIQQ AGIDPYYFGL
LFVLNLGIGV ITPPVGTVLY VVCGIGNIKI TQLVVKLVPF ILIEVVMLLL LLFFPSLSLT
PLNWLMGGN
|
|---|
| |