Gene Ddes_1342 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDdes_1342 
Symbol 
ID7285035 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 
KingdomBacteria 
Replicon accessionNC_011883 
Strand- 
Start bp1610161 
End bp1611114 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content54% 
IMG OID643582148 
ProductHlyD family secretion protein 
Protein accessionYP_002479922 
Protein GI220904610 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTGTG CAGTATTGGC AACCGCGGCC ATAGCGGTTT TGCTGGCAGG TTGTAACGGA 
CATTCGGACC GGGAAGTGCA AGGTTATGTG GAAGGTGATT TTGTTCGGAT TTCACTTCCT 
GCAAGCGGCA TTGTTGAAAA TGTTTTGGTG AAGCGCGGCG ATCACGTTGT CAAGGGGACA 
GTTCTTTTTA CGTTGGATAG CGAAAGGGAA AAGGCCGCGC TGGACAAGGC CCGATCAGAA 
CTTGACGTGG CAGAAGCCCA GCTTTCCAAC TTGCAGGCTA CAGTGCGTAA TGACGAAATC 
AGCGCCCTTG AAGCTGAAAT CAAGGAGCTG AAAGCCCAGC TTGCCTATAC ATCAAAATCC 
TATCGCCGCA AGTTCGGTCT GAGCCGGGCC GGAGCTGCCT CGCTTGACGA AGTAGAACGG 
CTGCGCTCGG AAGAACAGGT AATCAAGGCA AAAATTCTTG CCGCTGAAAG CCGGTTACGA 
TTGGGGCAGC AAAGCATTGG CCGCGATGGT GAAATTGAGG CAGCCCAGAA AATATTGAAG 
TATCGTTTGG CCGCCGTACG AGGGGCCGAA GCGGACTTGG CCCTGCGTCA GGCCATGGCG 
CCCGCAGATG CGGTGGTCAA TGACATTATT TACCGGCCGG GGGAAACCGT AGCGGGTGGG 
CAGGCAGTGC TTGAACTGCT GCCGCCGCAA AACGTCAAGG CACGCTTCTT TCTTTCGCCT 
GAGCAGATTG GTTGGGTAGC TGAAAATCCT GAAATTACAT TGCAGTGTGA AGGGTGCGGC 
AACGGTATCT CCGCTAAGGT CAGCTATGTG GCTTCCGAAG CTTCCTACCG GCCTCCTGTT 
CTTTATTCCC GTAATCAGTC AGAGCGGCTT GTGTTTTTGG CAGAAGCCGT TCCCCTGAAT 
TCTGTGGGAC TTCTTCGCCC CGGGCAACCG TTGAAGGTCG TGTTTCAAAA ATGA
 
Protein sequence
MKCAVLATAA IAVLLAGCNG HSDREVQGYV EGDFVRISLP ASGIVENVLV KRGDHVVKGT 
VLFTLDSERE KAALDKARSE LDVAEAQLSN LQATVRNDEI SALEAEIKEL KAQLAYTSKS 
YRRKFGLSRA GAASLDEVER LRSEEQVIKA KILAAESRLR LGQQSIGRDG EIEAAQKILK 
YRLAAVRGAE ADLALRQAMA PADAVVNDII YRPGETVAGG QAVLELLPPQ NVKARFFLSP 
EQIGWVAENP EITLQCEGCG NGISAKVSYV ASEASYRPPV LYSRNQSERL VFLAEAVPLN 
SVGLLRPGQP LKVVFQK