Gene Ddes_0956 details

Gene Information

• Locus tag: Ddes_0956
• ID: 7284636
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
• Kingdom: Bacteria
• Replicon accession: NC_011883
• Strand: +
• Start bp: 1113247
• End bp: 1115181
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643581756
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_002479541
• Protein GI: 220904229
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.246357
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGGAAC CTGCCGCGCG GGATGAAAAC CCGCCGGCTT CCCTACTTGA CGGCATAGAG 
CGCCCCTCAC AGCTTGTGGG CATGGATGAT GTGGCGCTCG CGCAGCTGGC GGGCGAGGTA 
CGTCAGCGCA TTATCGACGT GGTTTCGCGT AACGGCGGCC ATCTGGCGCC GTCTCTTGGT 
GTGGTGGAAC TGACGCTGGC GCTTCTTTCC ACCTTCAATA TTGAAGAAGA CAAGCTCGTG 
TGGGACGTGG GGCATCAGGC CTATGCCCAC AAACTGCTTA CCGGCAGGGC GCAGCAGTTC 
CATACCCTGC GCTCTTTTGG CGGTATTTCC GGTTTTCCAC GCATGGCTGA AAGCCCTTAT 
GACCATTTTG GCGTGGGGCA TTCCTCCACA TCCATTTCTG CCGCCTTGGG CATGGCTTTG 
GCCCGTGACC TTTCCGGACT CAAGCATCAC GTGCTTGCCG TGATCGGCGA CGGTTCCCTG 
ACGGCCGGAG AAGCCTTTGA AGGGCTTAAC CTGGCCGGGC ATATGGGACG TCGGCTTATT 
GTGGTGCTCA ATGACAATGA AATGTCCATT TCGCCCAATG TGGGGGCGCT TTCGCTTTTC 
CTGAGCCGCA CACTTTCGCG GCGCTGGGTG CGGCAGACCC GCAAAGAAGT GCTCAACTTC 
CTGCGCTCCA TACCCCGTAT CGGTCAAAAG CTGGCTGTAT ACGCCATGCG CGGTGAGTGG 
AGCTTCAAGT CTTTCTTTAC GCCGGGCATG CTGTTTGAGG CGTTTCGTTT CAACTATATC 
GGCCCTGTGG ACGGGCATGA CCTGCCGAGC CTGCGCCGCC ACCTGCAAAT GGCCGCAGCT 
GTCGAGGACG GCCCCGTGCT GCTGCATGTG CGCACACAAA AAGGCAAGGG CTATGCCCCG 
GCAGAAAAAA ATCCGACCCT CTATCACGGA GTGGGCCTGT TCACGCCCGA AACCGGTCAG 
CCGGTTCCTT CCACGGCCAA AGTACCGTCA TTTACCGGAA TTTTCAGTAA AACTCTGGTA 
GAACTTGCTG AAAATGATGA AAGAGTCATC GCGATTACGG CTGCCATGCC CGAAGGGACC 
GGTACAGACA GTTTTCGTCA GCGGTTTCCT GACCGCTTTG TGGACGTGGG CATTTGCGAG 
CAGCATGCCG TAACCTTTGC CGCCGGGCTT GCCAGTCAGG GATTCAGGCC GGCGCTCGCC 
ATCTACTCCA CATTTTTGCA ACGTGCTTAT GATCAGGTGG TGCACGACGT CTGCATACAG 
AATCTGCCGG TCACGCTTTG CGTGGACCGT GCAGGGCTTG TGGGCGAGGA CGGTGCCACC 
CATCACGGAG CCTTTGACAT CGCCTATCTG CGGCATATCC CGCAAATGAG CCTGCTGGCT 
CCCCGCAACG AGGACATGTT GCGGCACTGT CTGTTCACCT CTTTGAATCA TGATGGTCCC 
TGCGCATTGC GCTATCCCAG AGGGGCGGGC TTTGGTGTGC CTTTTGACGG CCTGCCGCGC 
CTGCTCACTC CCGGCAGGGG AGATCTGCTT CAGGATGGAG AAAATATCGC TATTATTGCC 
GTGGGTAACC GCGCCCACCC CGCGCTGGAG GCGGCGGCGC AGGCAGAACA GGCGCTGGGC 
TTCCGTCCGC TGGTTTTTGA TCCCGTGTGG CTCAAGCCTT TGCCTGAGGA ACAGCTGGCC 
TCCATTGCGC GCCGCTTTGA CCGCATACTT TTTGTGGAAG AAGGCGTTCT GGCTGGCGGT 
TTTTCTTCAG CAGTGCTGGA ATTTTATGCG GATAAGGGGC TGTTGCGTGG TCAGTGCATC 
AAACGCCTTG GCCTGCCTGA CAGTTTTGTG GAACACGGCA GCCAGTTGCG GTTGCGTGAA 
CTGGTGGGCC TGCGCACAAA AAATATTGCT GCTGCCATTG TGGAACTGGC AGGGCAGAAA 
GAGAATGCCA TGTGA 

 

Protein sequence

MPEPAARDEN PPASLLDGIE RPSQLVGMDD VALAQLAGEV RQRIIDVVSR NGGHLAPSLG 
VVELTLALLS TFNIEEDKLV WDVGHQAYAH KLLTGRAQQF HTLRSFGGIS GFPRMAESPY 
DHFGVGHSST SISAALGMAL ARDLSGLKHH VLAVIGDGSL TAGEAFEGLN LAGHMGRRLI 
VVLNDNEMSI SPNVGALSLF LSRTLSRRWV RQTRKEVLNF LRSIPRIGQK LAVYAMRGEW 
SFKSFFTPGM LFEAFRFNYI GPVDGHDLPS LRRHLQMAAA VEDGPVLLHV RTQKGKGYAP 
AEKNPTLYHG VGLFTPETGQ PVPSTAKVPS FTGIFSKTLV ELAENDERVI AITAAMPEGT 
GTDSFRQRFP DRFVDVGICE QHAVTFAAGL ASQGFRPALA IYSTFLQRAY DQVVHDVCIQ 
NLPVTLCVDR AGLVGEDGAT HHGAFDIAYL RHIPQMSLLA PRNEDMLRHC LFTSLNHDGP 
CALRYPRGAG FGVPFDGLPR LLTPGRGDLL QDGENIAIIA VGNRAHPALE AAAQAEQALG 
FRPLVFDPVW LKPLPEEQLA SIARRFDRIL FVEEGVLAGG FSSAVLEFYA DKGLLRGQCI 
KRLGLPDSFV EHGSQLRLRE LVGLRTKNIA AAIVELAGQK ENAM