Gene Ddes_0886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDdes_0886 
Symbol 
ID7284562 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 
KingdomBacteria 
Replicon accessionNC_011883 
Strand- 
Start bp1034816 
End bp1035439 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content58% 
IMG OID643581682 
ProductTetratricopeptide TPR_2 repeat protein 
Protein accessionYP_002479471 
Protein GI220904159 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCTC GCTACGATGA CCTGGACGAA TACATTGCGG ACCTCAAGGC GGAAATTGCC 
GAAAATGAGC AGTGCGCCAA CCATTACTAC AACCTGGGCC TGGCCCTGCT GACCAAGCGC 
GACTTCATCG CCGCCGAAGA AGCCTTTTTG AACGCCGTGC GCAATTCTCC GCACCTGGCC 
GAAGGCTATG TGCAACTGGG CGGCATCTGC CTTGAGCGCG GCGACCTTGA CGGCTGCCTG 
CGCTACAATG AAGAAGCAAC CAACTGCCGT GCCAAGTTCC CCGTGCCGTG GAGCAACATT 
GCCTTTGTGC ACCTGCAACG CGGCGAGCCG GACAAGGCCA TCACCGCCCT GAACAAGGCC 
CTCAAGTGGG ACCCCAACTT TGTGCAGGCC CAGAACGCGC TGGCGACCGC CTATTTCATG 
AAGGGCGACA TCAAGGCGTG CGAAGCGCAG TGCCTGTCCA TCATCAAAAA AGAACCCGCC 
TTTGCCCCTG CCTGGAACAA CCTGGCCCTG GCCTACTTTG ACCAGAGCGA ATTTGCCAAG 
GCCAAAGAAG CGGCCGACAA GGCGCAGGAA CTGGGTTTTG AAGTGTCTGA AGGTTTTCTT 
GAGGAACTCA GGAACCACTG CTAG
 
Protein sequence
MKARYDDLDE YIADLKAEIA ENEQCANHYY NLGLALLTKR DFIAAEEAFL NAVRNSPHLA 
EGYVQLGGIC LERGDLDGCL RYNEEATNCR AKFPVPWSNI AFVHLQRGEP DKAITALNKA 
LKWDPNFVQA QNALATAYFM KGDIKACEAQ CLSIIKKEPA FAPAWNNLAL AYFDQSEFAK 
AKEAADKAQE LGFEVSEGFL EELRNHC