Gene Ddes_0219 details

Gene Information

• Locus tag: Ddes_0219
• ID: 7283873
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
• Kingdom: Bacteria
• Replicon accession: NC_011883
• Strand: -
• Start bp: 271014
• End bp: 272831
• Gene Length: 1818 bp
• Protein Length: 605 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 643581002
• Product: PAS modulated sigma54 specific transcriptional regulator, Fis family
• Protein accession: YP_002478812
• Protein GI: 220903500
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.355755
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAAAC GCATATATGA CATAATATAT CTGCTTAATC TGATACCTTC CAGCAGCTGT 
GCTCTTGTTT GCAGTGATGA ACAATGGAAT ATTGAGGCAT GTAGTCATTC GTTTCATTTA 
CTTACGCAGA AAATCAACAA TAGCTTATCA GGCAATAAAG AAATCGATCC CTCCACACAA 
GATAATAATC ATTCTTTTTT AAGAACACTT GAGCTATATT GCAGCCACGA ATTGTCCAAA 
AAGGTGCAAG CAAGTAAACC GGATGTTCCC ACGGACATCA GCCTGCCCTG CGGCAAATGG 
ACGCTCTGCT GGAAATGGCT GAACAGCGAA GATTCCCGCC CCGGAAAAAA CAGGCGCAGG 
TTCGTTCTGC TGCATGAAAA CCACGCGGCG GACAACCAGC CCGACGTGCA CCTCCTGTAT 
CAGGAACTGC ACGCCATCAT GGACTCCATG TATGACGGCA TGTGGATTAT TGACAGCAAC 
GGCACCACCC TGCACGTCAA CAAGGCCATG AAGCGCATCG CCAATATTGA ACCTGAAGAG 
ATGATCGGCA AATCTGTCAC CATTCCGGTG CTGGAAGGCA AATTTTCTGC AGCGGTAACA 
CTGGAAGCCC TTGAACAAAG AAAGATCGTC ACCAGATTCG ACGACTACCC CAATGGAATC 
CGCTGTCTCA ATACAAGCAC ACCCATCTTT GACAAGCAGG GCAATATCTG GCGCGTGGTA 
GCCTGTATCC GCGATCTCAC CGAGCTTGAA ACCCTGCAAC GGCGGCTGGC AGATGCCGAG 
CGCACCGCTT TTTTGCGTCA GGCCGAAGCG GCAGCCGTGC AACACAGCAA TGAAAAAAAA 
CTCGTTGCTA CGGGCAAGGT TATGCGCCGC TGCGTGTCTG AGCTTGAAAA AGCGGCCCGT 
GCGCCCTCCG GCATTCTCAT TCTTGGCGAA ACCGGCACAG GAAAAACCTA TGCCGCTTCC 
TACATACACC AGAAAAGCCC ACGGGCCGAC GGCCCTTTCA TTTCTGTCAA CTGCGCGGCC 
ATCCCCCCGA CGCTTATTGA ATCGGAACTG TTCGGCTATG AAAAAGGGGC CTTTACCGGG 
GCCAGCCGTT CGGGCAAAAA GGGCTATTTC GGGCTGGCCG ACAAGGGCAC CCTGCTGTTG 
GACGAAATAG GCGAACTGCC CCTGAGCATG CAGGCAAAAA TCCTGCACGT GCTTGACGGG 
CAGGGGTTTC GCAAGATCGG CGGCGAAAAG GAACTGCGCG TGGATGTGCG CATCATCGCG 
GCCACCAACA GGCCGCTGGA CCAGCTTGTA AACAGCGGCC TGTTCAGGGC TGACCTGTAT 
TACCGCCTGC GTGTGCTGAG TATAAACATG CCGCCCCTGC GGGAACACCC CGAAGACATA 
CCGGCCCTCA TGATGGTTTT TCTGGACAAA GCCTGCACCC GCTACAACAC CATAAAAACA 
TTTTCACCCA GCGTTATTGA CTGCTTCAGC AAGCACTCCT GGCCGGGCAA TGTGCGCGAG 
CTGCGCGCAG CGGTGGACTT TCTGGCCGCC ATGACCGAAA GCAGCGTCAT ATCCATGCGC 
GACCTGCCCG CCTACCTGCT CGGTGATCTG CCCGGCATCT GCGAAGACGA AGAGGATGAG 
TCCCTGCCCG GGCAGGCCGA TTCAAACCTT TCTTTCAGGG AAGCCGTTGA AAATCTGGAA 
CGCTCCCTCA TCAGCGAAGC CCTGGCGGCT ACGGGCAGCA CCTACAAGGC GGCTGCCAGG 
CTTGGCATCA GCCAGTCCAC AGTGGTCCGC AAGGCCAAGC AGCTGCGCAT TCCCGTCACA 
GAGAAAAAAA GAAACTGA 

 

Protein sequence

MNKRIYDIIY LLNLIPSSSC ALVCSDEQWN IEACSHSFHL LTQKINNSLS GNKEIDPSTQ 
DNNHSFLRTL ELYCSHELSK KVQASKPDVP TDISLPCGKW TLCWKWLNSE DSRPGKNRRR 
FVLLHENHAA DNQPDVHLLY QELHAIMDSM YDGMWIIDSN GTTLHVNKAM KRIANIEPEE 
MIGKSVTIPV LEGKFSAAVT LEALEQRKIV TRFDDYPNGI RCLNTSTPIF DKQGNIWRVV 
ACIRDLTELE TLQRRLADAE RTAFLRQAEA AAVQHSNEKK LVATGKVMRR CVSELEKAAR 
APSGILILGE TGTGKTYAAS YIHQKSPRAD GPFISVNCAA IPPTLIESEL FGYEKGAFTG 
ASRSGKKGYF GLADKGTLLL DEIGELPLSM QAKILHVLDG QGFRKIGGEK ELRVDVRIIA 
ATNRPLDQLV NSGLFRADLY YRLRVLSINM PPLREHPEDI PALMMVFLDK ACTRYNTIKT 
FSPSVIDCFS KHSWPGNVRE LRAAVDFLAA MTESSVISMR DLPAYLLGDL PGICEDEEDE 
SLPGQADSNL SFREAVENLE RSLISEALAA TGSTYKAAAR LGISQSTVVR KAKQLRIPVT 
EKKRN