Gene Ddes_0045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDdes_0045 
Symbol 
ID7283696 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 
KingdomBacteria 
Replicon accessionNC_011883 
Strand
Start bp59454 
End bp60860 
Gene Length1407 bp 
Protein Length468 aa 
Translation table11 
GC content60% 
IMG OID643580830 
Productglutamate decarboxylase 
Protein accessionYP_002478643 
Protein GI220903331 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0076] Glutamate decarboxylase and related PLP-dependent proteins 
TIGRFAM ID[TIGR01788] glutamate decarboxylase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGCGA AAAACACCTT GCGCAATACG GTACTTGATG ACACCTATGC CGCGTCGGAT 
ATGGCAAATG CCATGCCGCG CCATGAGATG CCCCAACAGG AAAGCCGCCC CCGCGACGTA
TACCAGGCCA TTCATGATGA GCTTATGCTG GACGGCAATT CTCGCCAGAA CCTGGCGACG
TTCTGCCAGA CCTGGGTAGA CCCCGAGATC AACCAGATCA TGGCCGAGTG CGTTGACAAA
AACATGATCG ACAAGGACGA ATACCCGCAG ACTGCCGAAA CAGAAACACG CTGCGTGCAC
ATGCTGGCCG ACCTGTGGCA TTCGCCGGAC CCCAAGGGAA CCCTAGGCTG CTCCACCACC
GGTTCCAGCG AAGCCGCCAT GCTTGGCGGG CTTGCCATGA AGCGCCGCTG GGTCAACATG
CGCAAGGCCG CCGGAAAGCC CTATGACAAA CCCAACATGG TGTGCGGCCC CGTGCAGGTC
TGCTGGGAAA AATTCGCCCG CTACTGGGAC GTGGAACTGC GCGAAATTCC TATGGAAAAA
GACCGCCTGA TCATGACCGC CGAAGAGGTC ATCAAGCGTT GCGATGAAAA TACCATCGGC
GTTGTGCCCA CCCTTGGCGT GACCTTTACC GGCCAGTATG AGCCGGTGGA AGAAGTAAGC
AAAGCCCTCG ACAAACTGCA GAAGGACAAG GGCTGGGACA TTCCCATTCA TGTGGACGGC
GCCAGCGGCG GCTTTCTTGC CCCGTTCATC GAGCCGGACC TGCTCTGGGA TTTCCGCCTG
CCCCGCGTCA AGTCCATCAA CTCTTCCGGT CACAAATTCG GCCTTGCCCC GCTTGGCGTG
GGCTGGGTAG TGTGGCGCGA AAAAAGCGAC CTGCCCGAAG ACCTGATTTT CAATGTGAAC
TACCTGGGCG GCAACATGCC CACCTTTGCG CTCAACTTCT CCCGCCCCGG CGGCCAGATC
ATCGCCCAGT ACTACAACTT CCTGCGTCTG GGACGCGAAG GCTACCGCCG CATTCACCAG
AACTGCTACG ATACGGCCCG CTTCCTGGGC GACGAAATCG CCAAGCTCGG TCCCTTTGAA
GTGCTGTACA ACGGGCGCGG CGGCATCCCG GCCCTGTGCT GGACCTTCAA GGCCAATGCC
AAGACCAGCT ACAGCCTCTA TGACCTCTCG GACCGTCTGC GCTCGCGCGG CTGGCAGGTG
CCTGCCTACT CCATGCCCGC TCACCGCGAA GACCTCGTGG TCATGCGCGT ACTGGTACGC
CACGGCTTCA GCCGTGACCT CGGCTCCCTG CTTGTCGATG ACCTCAAGCG GGCCATGGCC
CACTTTGATG CACACCCCGT CAGCAAACCC CTGAGCGAAA CCGAAGCCGG CAGCAACAGC
CACGCCGGAC GCGCTGCAAA AAAATAA
 
Protein sequence
MTAKNTLRNT VLDDTYAASD MANAMPRHEM PQQESRPRDV YQAIHDELML DGNSRQNLAT 
FCQTWVDPEI NQIMAECVDK NMIDKDEYPQ TAETETRCVH MLADLWHSPD PKGTLGCSTT
GSSEAAMLGG LAMKRRWVNM RKAAGKPYDK PNMVCGPVQV CWEKFARYWD VELREIPMEK
DRLIMTAEEV IKRCDENTIG VVPTLGVTFT GQYEPVEEVS KALDKLQKDK GWDIPIHVDG
ASGGFLAPFI EPDLLWDFRL PRVKSINSSG HKFGLAPLGV GWVVWREKSD LPEDLIFNVN
YLGGNMPTFA LNFSRPGGQI IAQYYNFLRL GREGYRRIHQ NCYDTARFLG DEIAKLGPFE
VLYNGRGGIP ALCWTFKANA KTSYSLYDLS DRLRSRGWQV PAYSMPAHRE DLVVMRVLVR
HGFSRDLGSL LVDDLKRAMA HFDAHPVSKP LSETEAGSNS HAGRAAKK