| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_2554 |
|---|
| Symbol | |
|---|
| ID | 7270681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 2683714 |
|---|
| End bp | 2686248 |
|---|
| Gene Length | 2535 bp |
|---|
| Protein Length | 844 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643571150 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_002467549 |
|---|
| Protein GI | 219853117 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTTCT TATTCTTCGA TGAGTTACAG AAAAAAAATC TTGTTCCAGC CCTCATCGTC
GCAAGTTCCA TTGCATCCTT CCTCCTGATT GTGTATGGGC TCAGGCTTGG TATCACCTAT
GTGCTCCCGC ACCTGCTCTA CATCCCAATC ATCCTGACCG CCTACTACTA TCCGCGACGC
GGTCTTCTCT TCGCCGCTCT CCTCTCTGCC AGTTATTGTG CAGTCTCATT CTTCGTCGTC
ACCCCGGCAG CCGTTGAAAT ACTCTCCGCG ATCATACGTG CCGGCGTATT CCTCGTGGTC
GCTGGGGTGG TATCATTCCT GAGCGGACAA ATGCATCACG ACACCCAGAT CTGCCGCCGG
CTCGTTTCGG TGGTCAGATC CTCAGGTGAT GCGATCATCG GTAAAACCCC TGAGGGCTTT
GTCTCCGACT GGAATGCCGG CGCTGAACGG TTGTATGGAT ATACGTCAGA CGAAATGAAA
GGCAATTCGA TCTTCCGTCT CATTCCCCCC GAATTGAAGG AAGAACATCA CCTGATGCTC
GAAATGATCC TGCAGGGGGA GATGGTCGAA CATGTCGAGA CCGAACGAAT CACCAGAGAC
GGTCAACGTA TACAAGTCTC CCTCTCGCTC TCTCCGATCC GGAGCAATGC CGGGGGGATC
ATCGGGATAT CAGAGCTCGC CCATGACATC ACCGAGCGGC AGCAGCTCCA GAACGAGATC
CTGAACGCGA AGGACCGGTG GGAACGGACC TTCGACGCGG TCCCGGATAT GATCGCCATC
ATCGACGATC ATTTTCGGAT CGTCCAGGTG AACAGAGCGA TGGCCGACCA TCTGGGAGTT
TCACCAAACG AGACGGTGGG GCTGACCTGC TATGAAGTCG TTCATCACAC CGGTACACCA
CCGGCCACCT GCCTGCACAA AAAACTCCTC CTGGACGGCC AGTACCATTC GACAGATATC
CGTGAAGAAA CATTAAACGG GGACTTTGTC CTGACCGTAT CCCCCATCCG GGACCCTTCT
GGCACAATCC TCGGAAGTGT TCATATCCTC CGGGATATCT CTGAGAGGAA ACTAGCAGAG
AAACAGGTGC AGGAGAGCGA GAAGAAATAC CGGTCGATTT TCAATTCCTT CCCTGACCTC
TACTATCAGA CCGACCAAAA TGGCATCATC ACCATCCTCT CCCCTTCGGT CAAGAGACTC
GCCGGATGGG CACCGGAGGA TCTGATCGGT CACCCGGTCT ACGAATTATA TCCCTTCCCT
GAAGAGAGGG CCGGCCTGCT TGAGACACTG AGATGCACCG GTGAGGTCCA GGGATACGAG
ATCACCCTCA AGCACAGGGA CGGCTGCACT ATCCCGGCAT CGGTCAGCTG CCACCAGATC
TATGATGATG CTGGAGAGTT GGCTGCTATC GAAGGGACGA TCAGGGATAT CACCCAGCGC
AAACAGGGTG AAGCCGCATT CCGCCAGTTG AGTGCGGATC ACAGGGCGAT CATCGAGCAT
ACGCCGGCCA TGATCTGGTA CAAGGATACG AAGAATACTT TCATCAGGAT CAACCCGGCT
GGTGCACAGG CGTTTGGGAT ACCCATCGAA GAGATTGAAG GCAAAAACGC CGCGGAACTC
TTTCCGGACC TGGCAGAAAA ATATTACCTG GATGACTTGG AGGTGATCGC CTCAGGCAGA
TCAAAGATCG GCATCATCGA ATCGATGACC ACCGCAAGCG GAGAACATCT CTGGATCCAG
ATCGACAAGA TCCTGCTCAG GAACGAGGAG GGAACGATCT CTGGAATCCT TCTGGTTGCC
ATGGATATCA CCGAGCGCAA ACAGGCAGAG GATGCACTGG CGCTGGCGAG CAAAAAATTG
AACCTTCTAT CGAGTGTCAC CCGACACGAC ATGTTGAACC AGCTCACTGC ACTCAAGGGG
TATATCGATC TCTCCGAGGA AGAACCGGAT GAGGAGATGC GGGCGAAGTT CATCAGGAAT
GAAGGAATAA TTGCAGATTC TCTCGAAAGG CAGATCACCT TCACCGGTGA GTATCAGGAC
CTCGGCGTGA ACGCCCCGAC ATGGCAGAAC GTACTGGCGA GCGTGGAGAA AGCAGTAACT
CTGTTGCCCA TGAGGGAGGT GACCGTAAAG AAGGATTGTG CCGATTGCGA GATCTTCGCC
GATCTCCTCT TTGAGAAGGT CTTCTACAAT CTCATCGACA ACGCCCTCAG ATATGGCGGC
GAATCGATGA CAACCATCCG GATCTCATCC CATGAATCAG GGGGGCATCT CATCCTGGTC
TGCGAGGATG ACGGGAAAGG GATCTCTGCA GACGACAAAA AACGCCTCTT CACCCGGGGG
TTTGGGAAGC ACACCGGCCT TGGTCTCTTT CTCAGTCAGG AGATCCTCTC CATCACCGGG
ATCACAATCA CCGAAACTGG CGAGTTAGGG AAGGGCGCAC GGTTTGAGAT CACGGTACCG
AAGGGAGCCT ATCTACCGAT TCACCGATAT ACAGGCAGTA TCTCTAGAGT AGTCGACAGT
CCGATCGTGC CATGA
|
|---|
| Protein sequence | MDFLFFDELQ KKNLVPALIV ASSIASFLLI VYGLRLGITY VLPHLLYIPI ILTAYYYPRR
GLLFAALLSA SYCAVSFFVV TPAAVEILSA IIRAGVFLVV AGVVSFLSGQ MHHDTQICRR
LVSVVRSSGD AIIGKTPEGF VSDWNAGAER LYGYTSDEMK GNSIFRLIPP ELKEEHHLML
EMILQGEMVE HVETERITRD GQRIQVSLSL SPIRSNAGGI IGISELAHDI TERQQLQNEI
LNAKDRWERT FDAVPDMIAI IDDHFRIVQV NRAMADHLGV SPNETVGLTC YEVVHHTGTP
PATCLHKKLL LDGQYHSTDI REETLNGDFV LTVSPIRDPS GTILGSVHIL RDISERKLAE
KQVQESEKKY RSIFNSFPDL YYQTDQNGII TILSPSVKRL AGWAPEDLIG HPVYELYPFP
EERAGLLETL RCTGEVQGYE ITLKHRDGCT IPASVSCHQI YDDAGELAAI EGTIRDITQR
KQGEAAFRQL SADHRAIIEH TPAMIWYKDT KNTFIRINPA GAQAFGIPIE EIEGKNAAEL
FPDLAEKYYL DDLEVIASGR SKIGIIESMT TASGEHLWIQ IDKILLRNEE GTISGILLVA
MDITERKQAE DALALASKKL NLLSSVTRHD MLNQLTALKG YIDLSEEEPD EEMRAKFIRN
EGIIADSLER QITFTGEYQD LGVNAPTWQN VLASVEKAVT LLPMREVTVK KDCADCEIFA
DLLFEKVFYN LIDNALRYGG ESMTTIRISS HESGGHLILV CEDDGKGISA DDKKRLFTRG
FGKHTGLGLF LSQEILSITG ITITETGELG KGARFEITVP KGAYLPIHRY TGSISRVVDS
PIVP
|
|---|
| |