| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_2383 |
|---|
| Symbol | rpl13p |
|---|
| ID | 7272105 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 2527594 |
|---|
| End bp | 2528016 |
|---|
| Gene Length | 423 bp |
|---|
| Protein Length | 140 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643570985 |
|---|
| Product | 50S ribosomal protein L13P |
|---|
| Protein accession | YP_002467387 |
|---|
| Protein GI | 219852955 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0102] Ribosomal protein L13 |
|---|
| TIGRFAM ID | [TIGR01077] ribosomal protein L13, archaeal/eukaryotic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000110555 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.666425 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGACGA TTATTGATGC AGAAGGACTC CTGCTCGGAA GGATGGCCTC AATTGTGGCA
AAGCGTGCCC TTGATGGCGA GGAGATCGCC CTCATCAACG CAGAGAAGGC CGTGATCTCT
GGCGGTAGGG CGAGTATACT CCAGCACTAC CGTGTCAAGC GGACACGAGG TTCCCGCGAG
GGCGGACCGT TCTTCCCCCG CAGGCCTGAT CACATTGTAA AGCGGACGAT TCGGGGGATG
CTTCCCTACA AACGCCAGCG GGGTATCGAG GCCTTCAAGG CCATCAAGGC CTATGTCGGT
GTTCCTGTGG ATCTGAAAAA TCAGCCCATC GAGAAACTCG ATGAGGCACA TATCGACCGC
CTGAACACAT CGCGCTATAT AACAGTCGGC GCTGTAAGCA CCTTCCTTGG GTCGAAGTAT
TGA
|
|---|
| Protein sequence | MVTIIDAEGL LLGRMASIVA KRALDGEEIA LINAEKAVIS GGRASILQHY RVKRTRGSRE
GGPFFPRRPD HIVKRTIRGM LPYKRQRGIE AFKAIKAYVG VPVDLKNQPI EKLDEAHIDR
LNTSRYITVG AVSTFLGSKY
|
|---|
| |