| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_2197 |
|---|
| Symbol | |
|---|
| ID | 7270282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 2337469 |
|---|
| End bp | 2339271 |
|---|
| Gene Length | 1803 bp |
|---|
| Protein Length | 600 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643570811 |
|---|
| Product | DNA topoisomerase VI subunit B |
|---|
| Protein accession | YP_002467216 |
|---|
| Protein GI | 219852784 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1389] DNA topoisomerase VI, subunit B |
|---|
| TIGRFAM ID | [TIGR01052] DNA topoisomerase VI, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCTCG CTGAGGATCT GGCATCCTCA CAGCGCTCCA TCTCGATCGC CGAGTTCTTC
GAGAAGAACA AACATCTGCT TGGGTTCGAC TCCCCGACCC GCGGGATTAT CACCACCATC
AAGGAGGCCG TCGACAACGC TCTCGATGCC TGCGAGGAAG CCGAGGTCCT CCCTGACATC
TACATCGAGG TGAAGCGGAA GACCGGGGAT CTCTTCTGGA TCATGGTCGA GGATAACGGC
CCGGGGATTA TGCCCGAACA GGTGCCGTTC GTCTTTGGAA AATTGCTTTA CGGCTCTCGT
TTCCATCAGA TCCGGCAGTC GCGCGGGCAG CAGGGGATCG GGATCAGTGC GGCGGTCCTC
TACGCCCAGC TCACCTCTGG TACCCCGGCT GTCGTCACCA CCAGGACTGG GCCGGCCACG
CCGGCCGTCC GGATGGAGAT CCAGATCAAG GTCGCGACCA ACGAGCCGAA GGTCCTCTCC
AACAAGGAGG TTCCCTGGGA TCGGACCCAT GGAACCCGGG TCGAGATCGA GTTCACGAGC
ACCCTCTCGG CAAAGAAGCG GTTGATCGAG TACCTCCGGT ATACGGGGGT CGTCAACCCG
CACGCCCGAA TCCGGGCCGA GATCGACGGC GAGCCCTTCA CCTCCGAGCG GGTCAGCAAC
GAGGTGCTGG TCTGCCCGAA GGCGATCAAA CCGCACCCGT ACGGGATCGA ACTCGGGATG
CTGAAGCGAA TGGCCGAGGG GGAGACCCGG CCGCTGCTCG AATTTCTGAC TTCAGAGTTC
TCCCGGGTCG GGAAGAAGAC GGCCGAGGAG ATCTGTTCGA TCGCCTCCCT CCGTCCGGCT
GCCCAGGTGA AACGGCTGAA CGCCGACCAG CAGCGGTCCC TGCTCGCGGC GATGCAGCAG
GTGAAGGTGC CGGCCCCGCC GACCTCCCAG TGCCTCTCCC CGATCGGGGA GGAGTTGATG
GTCAGGGGTC TGGAAGCCGA GTTCAGGATG GACTTTGTCA AGGCCAGGAC CCGGCCTTCA
TCAGTCTTCT CCGGCCACCC GTTCATGGTC GAGGCCGCGC TCGGGTACGG CGGGAAACTC
CCGCCCGAAG GGAACGGGCA GATCATGCGG TTCGCCAACC GGGTCCCCCT GATCTATCAG
CAGGGGGCCT GTGCGATCAC CCAGTCGGTC GCCGGCGTGA ACTGGAAGGC CTACGGGATC
GGGCAGCAGG GACTGCCGAT GGGGCCGGTG CTGATTCTGG TCCACGTCGC CTCGACCAAT
GTCCCGTTCA CCTCGGAGTC CAAGGACGCG ATCGCCTCGA TCCCAGAGAT CGAGAAGGAG
ATCGTTCTCG CCCTCCAGGA TCTCGGGCGA GACCTGAAGG CGTTCATCTC CAGGCGAGAC
CGAACCAAAC TGCAGGAAGA CCGGGCCCGG GCGATCTGCG CGATCATCCC TGATATCGCC
CTGAAAGTGA GCGAAATCGT CGAGAAGCCG TTGCCGGACC TGACGGTGAT CGAGGGGCAG
ATCATGCACA AGGTGGTGGC CCGGAAGCGG ACGACGACCG GCCGGGTCGT CCTCTCAGTC
CACAACTACA CCGCCAAGGA CGTTGAGGTG CAGGTCTATG ACATCTCGAC TGACCCGGCC
CTCGACGCTG TTCCGGCGCC GGACTTCGTC TCCCCGCTGG ACGATACCTT CACGCGGGTC
TGGCGGGTAA TTCTCCCCCC CGGGCAGGGG TGGGAGGCGT CTTATACCGG TGCCGGCGGC
GGATCGCTGG ACCTGCGCGG CATTTCTGAA CAGATGAAAG TGGTGGTGGA TCTCGATGTC
TAA
|
|---|
| Protein sequence | MVLAEDLASS QRSISIAEFF EKNKHLLGFD SPTRGIITTI KEAVDNALDA CEEAEVLPDI
YIEVKRKTGD LFWIMVEDNG PGIMPEQVPF VFGKLLYGSR FHQIRQSRGQ QGIGISAAVL
YAQLTSGTPA VVTTRTGPAT PAVRMEIQIK VATNEPKVLS NKEVPWDRTH GTRVEIEFTS
TLSAKKRLIE YLRYTGVVNP HARIRAEIDG EPFTSERVSN EVLVCPKAIK PHPYGIELGM
LKRMAEGETR PLLEFLTSEF SRVGKKTAEE ICSIASLRPA AQVKRLNADQ QRSLLAAMQQ
VKVPAPPTSQ CLSPIGEELM VRGLEAEFRM DFVKARTRPS SVFSGHPFMV EAALGYGGKL
PPEGNGQIMR FANRVPLIYQ QGACAITQSV AGVNWKAYGI GQQGLPMGPV LILVHVASTN
VPFTSESKDA IASIPEIEKE IVLALQDLGR DLKAFISRRD RTKLQEDRAR AICAIIPDIA
LKVSEIVEKP LPDLTVIEGQ IMHKVVARKR TTTGRVVLSV HNYTAKDVEV QVYDISTDPA
LDAVPAPDFV SPLDDTFTRV WRVILPPGQG WEASYTGAGG GSLDLRGISE QMKVVVDLDV
|
|---|
| |