| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1920 |
|---|
| Symbol | |
|---|
| ID | 7272737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 2038165 |
|---|
| End bp | 2040498 |
|---|
| Gene Length | 2334 bp |
|---|
| Protein Length | 777 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643570534 |
|---|
| Product | Carbohydrate binding family 6 |
|---|
| Protein accession | YP_002466947 |
|---|
| Protein GI | 219852515 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3291] FOG: PKD repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.208758 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGTTAA AAGTTCGAGA GATGAATCGG GCGCTGCTGA TCCTGCTGGC AGCGGTCTGT
CTTCTGCTGT TGATCGTTCC AACTGGGGCG AGTACGCCTG TGTATGGTCC GGATCGGGTG
TTCATCAACG AGTCCGGCAC CTACGAACTC ATGAATGATC TCACCTACGG TTCCGGGGAA
CCGCTGATTG TGATCAATGC ATCCGATGTC GTCCTTGACG GCCAGGGCCA TACGATCCAT
GCGATGTATG ACCAGGAGGG TACCGGTATC GTTGTCAACC CGGAGGGTGA ATCCCCGACC
GTCCAGCTCT CCAACGTCAC CATCAAGAAT GTGAACCTGG ACAACTTGAC CTATGGGATC
GTCTTCTTTA ATTCCCGGGG TTGTACGGTA CAGGGTGTCG CCATGACCGG CAACGGAATG
GATATTTTTC TCTCCAATAA TTGTACGGAG AACACCATCT CGGGCAACAC CTTCAGCGAT
GGAATAGGTA TCTACCTTCT CGATTCATGT CGTTCAAACA CTATCAGTAA GAACACCTTC
ACCGGCTGCC TGCCTGGTAT CTACATGAGC GGAGACTGTG ACCAGAATAC GATCTGTGAG
AACACCTTCA CCGGCAACGT GTATGGTATC CTGATCTCAG ATTCGAACAA TAATATCGTG
AAAGGGAATT CCATCATCAA CAGTATGACC TGTGGGCTGG TCGTAGGTGG TGGATCTGGA
AATACCATCT ATAACAACTA CTTCAACAAC CTTCAGAATG TTTTCGTAGC AGGTCACGAC
AGCACCAACA TCTGGAACAT CGACCGGACA GCAGGTCCCG ACATCATGGG CGGTCCAACG
ATCGGTGGTA ACTTCTGGGG TACGCCGGAT GGGACCGGTT TCTCCCAGAC TGATCCGGAT
ATCAACAACG ACGGCTTCTG CGACGATCCG TATACCATCG GAACAGGCAA TATCGATCGT
TACCCGCTTC GTTTCTGGCC CCCGACAGTC ACCGCCGGCT TCTACGCCTT CGGCCATGTC
GGCCAGGCCC CGTATTCGGT CCGGTTCCTG GATCAGTCCG CCGGCTCGCC GACCGCCTGG
ACGTGGGACT TCGGGGACGG AAGTACTTCA ACCGAGCAGA ACCCGACCCA CATCTACAAC
CAGACCGGTG CCTACAACGT GGCCCTGACC GCATCGAACG GGTGGGGGAG CGATATGGCG
ATCCAGTACC GGTGTATCAT CGTCAACACG GTGCCGGCTG CCAACTTCAC GGCCAATGCG
ACCGCCGGCC GGACGCCGTT CACCGTGCAG TTCACTGATC AATCCACCGG AGCGAGCGGG
TACCAGTGGC AGTTCGGCGA CGGCACGACC TCGACCGAGC AGAACCCGGT CCACACCTAC
ACAACCCCGG GCTCCTACAC CGTGACGCTG GTCGCCTCTG GTGTGAATTA TGGCAGCGTC
TACTCGCAGA AGCCGGGGTA CATTACGGTC ACCGACCCGC CGACGGTCGG GTTCTCGGCG
AACGTGACGG CCGGCCTCGC CCCGCTCGCC GTGCAGTTCA ACGAGTCGGT GAACGGCTCG
GTCCAGTATT ATTACTGGCA GTTCGGGGAC GGGGGGACTT CGTTCGACAA GGAGCCGATC
CATGTTTATA ACAAGGCTGG CCTGTACACC GTCTCTTTCT ATGCGATCGG TTCGAACGGG
TCCCAGGTGA AGACAGTCGA TCAGTACATC AATGTCACCT CCCCGGTCAT GCCGACTCCG
ACAACACCGG CGCCGTTGAA CACCACGACT GTACCGACGA CGATGGTTCC GACTGCAACC
GTCACCCCGG TACCAACGAA CACCACTGGT GCTCCGACAG GTACGACAGT CGCTCCGACC
GCGACTGGCT CGGCATACTA CGGTCCGCAC ACGATCCCCG GGACGCTGCA GGCCGAGGAC
TATGACCTCG GCGGTGAGGG TGTCGCCTAC CATGACACCA CCGCCGGAAA CGAAGGCGGG
ATCTACCGTC ATGACGACGT CGACATCGAG CAGCTCGATA CCGATCACAG TCCGAATGTC
GGCTGGATCC GTTCCGGCGA GTGGCTCGCG TACACGGTGC ACGTCAGCAC CGCCGGCACC
TACGACGCCG GCTTCCGGGT GGCTTCATCC CACGCCGGTT CATCTGTCCT GGTGTATGTC
GACGATGAGA CGACGCCGGT CGCGACCGTG ACCGTCCCGA ACACCGGCGA CTGGCCGATC
TTCCGAACCG TCTCGGTGCC GGTCATCCTG CCGGCCGGCA CCCACCGGCT GAAGCTTTCG
TTCCCGACCG ACTTTGTCAA CATCAACTGG ATCACCTTTG CCCAGAGAGG CTGA
|
|---|
| Protein sequence | MMLKVREMNR ALLILLAAVC LLLLIVPTGA STPVYGPDRV FINESGTYEL MNDLTYGSGE
PLIVINASDV VLDGQGHTIH AMYDQEGTGI VVNPEGESPT VQLSNVTIKN VNLDNLTYGI
VFFNSRGCTV QGVAMTGNGM DIFLSNNCTE NTISGNTFSD GIGIYLLDSC RSNTISKNTF
TGCLPGIYMS GDCDQNTICE NTFTGNVYGI LISDSNNNIV KGNSIINSMT CGLVVGGGSG
NTIYNNYFNN LQNVFVAGHD STNIWNIDRT AGPDIMGGPT IGGNFWGTPD GTGFSQTDPD
INNDGFCDDP YTIGTGNIDR YPLRFWPPTV TAGFYAFGHV GQAPYSVRFL DQSAGSPTAW
TWDFGDGSTS TEQNPTHIYN QTGAYNVALT ASNGWGSDMA IQYRCIIVNT VPAANFTANA
TAGRTPFTVQ FTDQSTGASG YQWQFGDGTT STEQNPVHTY TTPGSYTVTL VASGVNYGSV
YSQKPGYITV TDPPTVGFSA NVTAGLAPLA VQFNESVNGS VQYYYWQFGD GGTSFDKEPI
HVYNKAGLYT VSFYAIGSNG SQVKTVDQYI NVTSPVMPTP TTPAPLNTTT VPTTMVPTAT
VTPVPTNTTG APTGTTVAPT ATGSAYYGPH TIPGTLQAED YDLGGEGVAY HDTTAGNEGG
IYRHDDVDIE QLDTDHSPNV GWIRSGEWLA YTVHVSTAGT YDAGFRVASS HAGSSVLVYV
DDETTPVATV TVPNTGDWPI FRTVSVPVIL PAGTHRLKLS FPTDFVNINW ITFAQRG
|
|---|
| |