| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1896 |
|---|
| Symbol | |
|---|
| ID | 7272713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 2010899 |
|---|
| End bp | 2011654 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643570511 |
|---|
| Product | ThiJ/PfpI domain protein |
|---|
| Protein accession | YP_002466924 |
|---|
| Protein GI | 219852492 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0693] Putative intracellular protease/amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.815712 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.911419 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGAGCA GAGATAAGGG AAGAGTGCTG ATCATCCTCT CCGGGGCGGA TCACCTCAGG
ATGAAGAACG GGACGATGCT GAAGACTGGA TATTATCTGA ATGAACTCTC CGATCCGCTC
GCGTACCTCC ATCGGGCCGG GTTCAGCGTT GACTTTGCAT CCCCCGGGAG AAGAACTCCT
GCCATCGATC CCCTGAGCCT GAACTTTCTG AAAGGGGAAC GAAGGACACA GGCGCTCGCA
CGGGTCGAGA CCCGTGAAGG GTTGATGAGG CCGCTGGCGA TCGAGCGGAT CACCGACGAT
GAACTGACCG ATTACTCGGG TGTCTTCGTC CCGGGCGGAC ATGCACCGAT GGCAGACCTC
GCCGGCATGG AACGGATGAA GATACTCTTC GAACATTTTC ACCGGGGATA CAAACCCACC
TGTCTGATCG GCCATGGGGC GGCCGCAGTG ATCCCCTCGA TCACGCAGAA CAGGCCCTGG
ATCTATCGGG GCTACCGGAT GACCTGTTAT CCAGACTGGA TGGACTGGAT CGCACAGGCC
GTACTGAGGC GCCTCCCAGG GAAACTCCCC TTCTCCATCT CCCGAAACCT GAAGCGCGCA
GGTGGGATCG TCAGGCATAA CCACTTTCCA GGACGATCAT TCGTCATCGA GGACCATGAA
CTGCTGACAG GACAGGATCC AAGGTCTGCA GACCGGCTCG GGAGAGCGTT TGTGACGAAA
CTCGAAGAAT ACCGGAAGAA GGAGCCGCTC TTCTGA
|
|---|
| Protein sequence | MGSRDKGRVL IILSGADHLR MKNGTMLKTG YYLNELSDPL AYLHRAGFSV DFASPGRRTP
AIDPLSLNFL KGERRTQALA RVETREGLMR PLAIERITDD ELTDYSGVFV PGGHAPMADL
AGMERMKILF EHFHRGYKPT CLIGHGAAAV IPSITQNRPW IYRGYRMTCY PDWMDWIAQA
VLRRLPGKLP FSISRNLKRA GGIVRHNHFP GRSFVIEDHE LLTGQDPRSA DRLGRAFVTK
LEEYRKKEPL F
|
|---|
| |