| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1861 |
|---|
| Symbol | |
|---|
| ID | 7272678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1975115 |
|---|
| End bp | 1976752 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643570476 |
|---|
| Product | flagellar assembly protein J |
|---|
| Protein accession | YP_002466889 |
|---|
| Protein GI | 219852457 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1955] Archaeal flagella assembly protein J |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAGG TGGCGATAAG CGGGGCGATA TCCGAGGAGG ATAAGCCAAA AGAGAGTGCC
TTTGCCGGGA TCGTCAAATC ATTTCAGGAT TATTATGCGG GGATCATTGA GAACAAGCAG
ATGCCCGCAG ACCTTCTGTA TATGATCACC TATATGACCT CCCTTGCCCT CGCCCGCGCG
TCGCGGCCGG AACTCTTTGC CAGTGCAAGC GAGCGGAGCG AGTATGCCTC CTCAAAATAC
ATCAAAAAGG TCAATATCCT CACGATGGGG TGGGGGTTCA GTTATAAGGA GTCCCTGGAG
ATCACCGCCG ATCGGGTGAA AAATCCCCTG ATCCAGAGTC TCTTCAACCG TTTCTCCAAC
TCGATCGATT CTGGGGTGCC GGATGAGGAG TTTCTCAGCA ATGAACTGGT CACGACCAGA
ATGGTCTATG TCAGCAACAT TGAACAGGGA TTTGAACTGC TGAAGAAGTG GGGGGATGCC
TACATCGCGA TGCTTCTCTC AAGTGCTGTG GTCGCTGTCA CCATGATGAT CTCGGTGGCG
ATCTATGCGC CGACCGGCAT CGATATGACC CTGAATATGT CGTACGCGCT GACGCTCGGG
ATCAGTATCT TTGGGATTGT GTTGATGTAT AAATCCGTCC CCGATGATCC GAAGACACAT
GGACTTGATA CCTGGCGTTC CAAGGAGCAG ATCTCGATCA GGAAGATTGA GCGGATTATG
GTTCCGCTGG TCGCTGTCAT CTCTCTGATC ATGGTGGCAT TCGGGGTGAA TGCCGGTTTT
GTCTGTCTCT TCATCGGGTT GATGATGGGT CCTTTGGGGA TCATCGGGTA TATCGACGAC
ACCAATATCT CCCAGCGTGA TGACGATTTT TCAATCTTTA TCCGGTCGCT CGGGTCTGTG
ATGGAGGGGC AGGGGGCCAC TCTGCCGATT GCGCTGGACC AGGTGGACAA GAAATCGCTG
ATCGCGCTCG AACCGCTGGT TCGGTCAGTT CACTCCAAGA TGAACCTCGG CCTTGATGAG
GAGCAGATCT GGGAACGGTT CATCGGTGAG AGTGGATCGA ACCTGATCTA TAAGTATCTG
AATATCTTTC GTGATACGGT CGCGACCGGG GGGCCGGCTG GTGAGATTGG AAAGGTGGTC
GGCAATTCGA TGCAGAACAT GGTGCTCCTC CGGCAGAAGC GGGATATGCT GGCCAAGAGT
TTTATCATTC TGTTGATCCC GATGCACGTG ATGATGGTCG GGATTCTGGT AGCCCTCTTC
GATATCATGC TGACCCTGAC GACGGCCATC ACCTCGATGA TGAATAAGTT TGCTGATGCT
GCTGCTGCTT CTGGGGGTGA TACTGGTATG GGGGGAAACG CTTTTCTCGC AGGCTCTCTC
AATATGTTTG TCAACTTTCC AAAGGACGTG ATGACCAACT ATGTCGTGAT CATCATGGTG
ATCCTGTCGA TATCCAATGT TTTAGCTGCA AAGATTGTGT GGGGTGGGGA CCGGTATATG
TATTATCTGT ATATTGCAAT CTTCTTCACC CTATCGGGAT TGATCTTCCT GGTCCTACCG
ACCCTGGTAG GGATGTTCTT CAGTGTTGAT GTGCTGACCA ATATCGCTAA CTCTGCGACG
GCGGCGAATA CGACATGA
|
|---|
| Protein sequence | MAEVAISGAI SEEDKPKESA FAGIVKSFQD YYAGIIENKQ MPADLLYMIT YMTSLALARA
SRPELFASAS ERSEYASSKY IKKVNILTMG WGFSYKESLE ITADRVKNPL IQSLFNRFSN
SIDSGVPDEE FLSNELVTTR MVYVSNIEQG FELLKKWGDA YIAMLLSSAV VAVTMMISVA
IYAPTGIDMT LNMSYALTLG ISIFGIVLMY KSVPDDPKTH GLDTWRSKEQ ISIRKIERIM
VPLVAVISLI MVAFGVNAGF VCLFIGLMMG PLGIIGYIDD TNISQRDDDF SIFIRSLGSV
MEGQGATLPI ALDQVDKKSL IALEPLVRSV HSKMNLGLDE EQIWERFIGE SGSNLIYKYL
NIFRDTVATG GPAGEIGKVV GNSMQNMVLL RQKRDMLAKS FIILLIPMHV MMVGILVALF
DIMLTLTTAI TSMMNKFADA AAASGGDTGM GGNAFLAGSL NMFVNFPKDV MTNYVVIIMV
ILSISNVLAA KIVWGGDRYM YYLYIAIFFT LSGLIFLVLP TLVGMFFSVD VLTNIANSAT
AANTT
|
|---|
| |