Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpal_1796 |
Symbol | |
ID | 7270342 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosphaerula palustris E1-9c |
Kingdom | Archaea |
Replicon accession | NC_011832 |
Strand | + |
Start bp | 1886216 |
End bp | 1888762 |
Gene Length | 2547 bp |
Protein Length | 848 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643570411 |
Product | PKD domain containing protein |
Protein accession | YP_002466825 |
Protein GI | 219852393 |
COG category | [R] General function prediction only |
COG ID | [COG3291] FOG: PKD repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAACCA TGCCTGACAC AAAACATACG ATACAGACCT ACCTCATGGT AATACTGCTC CTGACCATGG CGCTGCTGGT AGCCCCTGCA GGTGCAGAAC TTGTACAGTC GAACGGAACA ACCTCTATCG GTGTCGATCA GACCCAGGAA CTGAAAGATA CTGCAGCCTT CTCCGCCAAC AAACATGTAT TCTTCAATGT GGCGAACGAC GCCGGCGTGA AGTACAACTA TGACGGCGCA CTCTACAGCG GCCCGAGCAA CACCTACTAC ATGAAGTTCG ATGGAGGCGG ATTGAATGCC CTTCATATCA CCAGCGACCC CGCGAGCCCG TACGGGAATG TGATCGCGTC GAACGCCCAA TCCGGTACCT TCTTTCTCTC CGACACCGGG GGGAGAGGAT TTGATGACGA TGGCATCCTG ATGATCGCCG TAAAAGGGGA TGTCCCGAAC GACTTCAGGG TCCATATCCG GGCGAGCGGC TACACCTGGA CACCGGCCAC TTCCGGAGTT TACAATCCAA CCATCCCGAG CTCAGTCACC TACCAGCCGG TCTCCCTTGA CGAAACGTTC ACCAGGGACG ACCTCATCTA CGGCCCGCAG AACTGGAAAC CATGTTCGGT GGCGAACTAT CCGATCTATA ACGGACAGGA TATGACGAAC ACCCAGGACA CCTACCAGAT GATGTTCGTC GATCTGAAGT CAGGGATCAT CGGCAAGAAT TCCACCGCCG GCGCCCCGGC ACTTACGGAC AATGGTGCGA TCCGGGTCGA TTACTCCTTC GAAAACCTGA ACACCTTCGC TGCCTTCGAT GCCTTTGCAT GGTGCAGTGC CTCCAACCAG GGGCAGGGGA TCACCTGGAC GAATGAGGTC GCCGCAGCCG GCTCGTCCTC GGGGTCCGCG AACGGCTACA CCGTCACCGG TGTCCCACGG GCACCGGTCG CCGCCTTCAC CGCAAATACC GTAAGCGGCC CGGCACCCCT TTCGATCGGG TTCACCGATC AGTCGACCAA CACCCCGACG GCCTGGTCGT GGAACTTCGG CGACGGGACC ACCTCGACCG AGCAGAATCC ATCCCACACC TACACGACAG ACGGTACCTA CTCGGTCGCC CTGACCGCGA GCAACGCCGG CGGCAGTAAC ACGGTCACCA GGACCAGTTA TATCACCGTC CGCTCCACGA CCCCCACGAC AGGGCCGACA ACGGTGCCGA CAACCGGCAA CACCACCGTG CCGACGACGG TGACGACGAT CCCCACCACC GGAACGACAA CGGTCGCGAC ACCAACCCCA ACCATCACAA CACCGCCGCT GGCGGCCAAC TTCACGGCGA ACGTGACGGC CGGCCAGTCC CCACTCGCCG TGCAGTTCAC CGACTCGACG ACCGGTGCGG TCCAGAGTTA TTTCTGGCAG TTCGGCGACG GCGGGGCCTC GTATGACAGG AACCCGGTGC ACACTTACAC GACAGCCGGC ACCTACACCG TCTCCCTCAT CGTCAGCGGC CCCACCGGAA CCCAGGTGAA GACGAACGAG CAGTACATCA CCGTCACGGC GGTAGTGCCG ACCATGACGA CGGTGGCCCC GCTCACCAAT TATCACCACA ACTATCTCCA GGTCTCAAAC ACTGAAGGTG CCCGCTTCGA TCTCCACAAC AACGGTACCT ATTACCAGAA GAGCGACGGG GGCGGGACCA ATGCGATCTG GATGACCGGA ACCCCGTCGG TTCCGCAGGG TCAGACGATC AACACCACCA ACCAGTCGGG CGTCTTCTAC CTGACCGATA CCGGGGGAAG AGGGTTCGAC GACGATGGCA TCCTCATGCT TGCGGTCAAC GGGACGATCC CTGACGACTT CAAGGTCCAT ATCCGAGCGA GCGGGTATGC CTGGACACCG ATTCCAAACT ACCTTTCACC AACCGCGAAC GATATAACCT ATGTCGACGG CTCGATCGAT GAGATCTTCA CCAAGGACGA CTTCATCTAC GGCCCGCAGA TCTGGAAGCC GGCCGGGCAG GCGAACTACC CGATCTATAA CGGACAGAAT CTGTCCGACA CGCAGAACAC CTTCCGGCTG ATGTTCATCG ATCTGCGTGC AGGCATCCTC GGCAAGAGCT CCAAAGCCGG AATCTCCACG CTGCAGAACA ACGGTGCGAT CAAGGTCGAG TACTCGTTCG ATCATCTGAA CACCTTAGCC GCCTTCAACG CCTACGCCTG GTGCGAGAAC TCCACCCTGG GCGAAGGGAT ATCATGGACG AACGGGGTCA ACGCCATAGG CCAGTCCTCG GTTGCAAGCG GCTACACCGT GTCGGGGATG TCGACTTCGA CGGCCCCGAT CACTATCCCA TCGGCGACCC GCCCCCCCAC CGACCCCAAC AGGGATGGAC TGTATGAAGA CCTGAACGGA GACGGCGTGG CCGACTTCAA CGACGTGGTC CTCTTCTTCA ACCAGATGGA CTGGATCGCG GTGAACGAGC CGGTCACCGC CTTCGACTTC AATAAAAACG GCTCCGTCGA CTTCGATGAC GTCGTTCTGC TCTTCAATAT GCTCTGA
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Protein sequence | METMPDTKHT IQTYLMVILL LTMALLVAPA GAELVQSNGT TSIGVDQTQE LKDTAAFSAN KHVFFNVAND AGVKYNYDGA LYSGPSNTYY MKFDGGGLNA LHITSDPASP YGNVIASNAQ SGTFFLSDTG GRGFDDDGIL MIAVKGDVPN DFRVHIRASG YTWTPATSGV YNPTIPSSVT YQPVSLDETF TRDDLIYGPQ NWKPCSVANY PIYNGQDMTN TQDTYQMMFV DLKSGIIGKN STAGAPALTD NGAIRVDYSF ENLNTFAAFD AFAWCSASNQ GQGITWTNEV AAAGSSSGSA NGYTVTGVPR APVAAFTANT VSGPAPLSIG FTDQSTNTPT AWSWNFGDGT TSTEQNPSHT YTTDGTYSVA LTASNAGGSN TVTRTSYITV RSTTPTTGPT TVPTTGNTTV PTTVTTIPTT GTTTVATPTP TITTPPLAAN FTANVTAGQS PLAVQFTDST TGAVQSYFWQ FGDGGASYDR NPVHTYTTAG TYTVSLIVSG PTGTQVKTNE QYITVTAVVP TMTTVAPLTN YHHNYLQVSN TEGARFDLHN NGTYYQKSDG GGTNAIWMTG TPSVPQGQTI NTTNQSGVFY LTDTGGRGFD DDGILMLAVN GTIPDDFKVH IRASGYAWTP IPNYLSPTAN DITYVDGSID EIFTKDDFIY GPQIWKPAGQ ANYPIYNGQN LSDTQNTFRL MFIDLRAGIL GKSSKAGIST LQNNGAIKVE YSFDHLNTLA AFNAYAWCEN STLGEGISWT NGVNAIGQSS VASGYTVSGM STSTAPITIP SATRPPTDPN RDGLYEDLNG DGVADFNDVV LFFNQMDWIA VNEPVTAFDF NKNGSVDFDD VVLLFNML
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