| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1756 |
|---|
| Symbol | |
|---|
| ID | 7271216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1827900 |
|---|
| End bp | 1830692 |
|---|
| Gene Length | 2793 bp |
|---|
| Protein Length | 930 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643570372 |
|---|
| Product | Carbohydrate binding family 6 |
|---|
| Protein accession | YP_002466786 |
|---|
| Protein GI | 219852354 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.127893 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGGG GTTTCGGCAG ATGGTATAAC TGGATTCTCG GGTGTATGAT CATACTCCTG
CTGCTGGTTA TGGTGATGGG GGGTGCCTCT GCTCAGGAGG TATATGCAGG GGTAGGGATA
TCTGGGGTTT CGAATAACTC TTCTTCTGCG GTGCAATTAC CGGTCATGCA TCAGAATGAT
TCCACGCTGA AGCATCAGAT CGATCAGTAT GAGACTGCGC CAACTGTCTC TCTTGACACT
GCAGGGGTGC TGAAAGCTCG CTTAGGCCTT AGCAGATCTC AGAATCTCCT CCCCTATCTT
GATTATAATG CTATCCAGAG GGATCAGAAC CCGACGGGGA ACTGCTGGGT CTGGGTTGGT
ACCGGCTTGA TGGAGATCAC TCATCAGGTA GAGGATGCAA TCAGGGATCC CCTGTCCATT
CAGTACTTTG ATTCCACCTA TCATGGTGGG GCAGGATTGA CCTGGGCCGG GAATGGGGGA
ACCCTGGCTG ACTTTGTCAA TTTTTATCAG CAACAGAAGA TAGCAGTTCC TGCATCCAAT
ACCAACGCTT CGTTCAAGGA CAATACCTAC TGGTGTAATG ATAACAACCA GGCCTGGGTA
AAGGCATCGG ATATCGCAAC AGATCCTCAC TACTCGATCG CTTCGATCCA GGAGCAGAAG
ATCCCTACCC GGAGTATCGG AACAGAGGCT GCCATTGCAA ATATCAAGAC TGTTCTGGAC
AGTAACAAAG GAGTCTATTT CGCATTTCGG CTTCCGAACG AACAGGCATG GAATGACTTC
AACAAATTCT GGCTTGAAGG GAACCAGTCA GCGGTCTGGA ACCCCGATCT CTATGATGGT
AATCCCTGGG AATCCTGGAG CGGAGGGAGC CATGCAGTCC TCTGTGTTGG GTACCAGGAT
ACTGATCCTG CAAACAGGTA CTGGATCATG CTCAACTCCT GGGGGAATGC GTTTGGGAAT
CGGCCGAGCG GCCTCTTCCG GGTGAAGATG GATATCGATT ATGATGCCAT GTTCACCTCC
TCGATGTCGA TCCCTGCAAC TGAGTGGGAG ACGATCGATA TGAATTATTC ACCCTCCCCA
CAGTCAACAT CGATCGAGAA ACCCTATACC ACCCATACAG TCCCCTGCAG GGTTGAAGCA
GAGGATTATG ATTATGGAGG GGAGAACATC TCGTATTATG ATACGACCAG TGGAAATTCG
GGAAAAGTAT ACCGGAATGA TGATGTCGAT ATCGAACAGA CCACGCAGGC TGGAGGCTTC
GATGTCGGCT GGGTCCGGAA TGGCGAGTGG CTGCAGTACA CACTCGACGT TCCCGAGGCC
GGCGATTATG AGATGAGGAT TCGATCCTCC TCACCGGGTG CAGGTGACCA GATTGTTGTC
AGCGTCGATG GCATTGATGC TGGAACCCTG ATCATTCCAC AGACCGATTC CTTTGATAAT
TACACCAACG TATCCCTCCC GGTTAAGTTT TCAGCCGGGA GGCATCTGGT CAGGCTTACC
TTCGCAGGTG ATCGTCAGAA CATCGATTAC TTCGAGATCA ATCCAGCCAT TCCTGCTGAG
CAGGGAGTGA TCGATGGGAA AATATCTCTT GGGTCCACTC CATCGGGTGC AACGGTCTTC
CTGGATAACG TGCTGGCCGG TATGACCCCG CTGACCATAC CTTCCCTGCG CCCAGGCAGT
CACCATCTGG ACATTGCCAA GAGTGGATAC CAGACACAAC AACTGACAAC TGTGATAAAG
TCCGGGGAGA CTCAGCAGAT GAATGTTACC CTGTTAAGGA GTTATCCAGC CCCGTATGTG
AACCATACCT TACCGGCTCT GATCGAGGCG GAGGACTATA ATCTTGGTGG TGAGGGGATC
GCCTATCATG ACACGACGGC ATGGAATGAA GGATCGGTTT ATAGAAATGA CGGTGTCGAT
ATCGAACAGA TTCATCCAAC TGGCGGCTAT AAAGTCTGCT GGATCAGGGA TGGTGAGTGG
CTCACGTATA CGGTCACGAT CCCTCAGGCA GGAAATTACA CTGTCATATT TACTGGCTGT
TCGATAACCC CGGAATCATC ATGCACCCTC TCAATCGATG ATACCACATT GACGACGGTC
TCATTACCAG ATACCGGATC CTCTGATCGC TTTGGAACAG TTCAGCGGAT GGTGAGTCTG
CCTGCAGGTG TTCACCTGCT GAAACTCTCA TTTATTGGAC GACAGGACGT TGACAATCTT
CAGTTTGTGG CTGCAGGTCT ACAGCCCCAG GTCTCTTCAA CAACCGTGGC TACACCCGCC
CCGATTTTGG AGACGCCTAC GGTCTCTCCA TCAGAGACAT TCATCGTCAG ACCGACTCCA
TCGGTAACCT TCGGCCAGTT CCAGTCACTT CCCGGTCAGA TCCAGGCAGA GGATTTCGAC
ACCGGTGGCG AGATGGTGGC ATACCATGAC ACGACCTCAG AAAACCTGGG GGAATCGTAC
CGTGACGAGG GAGTGGATAT CATTTTTAAC CCAGTGGATG GGAGTAATAG TGTTACTGAC
ATAGAACCCG GGGAATGGAT CAGATATCCG GTTAATATCA CGGAGAGTGG GGTCTATAAT
GCCAGCTTCA GAGTCGCGGC AAATGTGTCG GGTTCAACCG TTGATATTCT GATCGATGAT
TCCAATCTGA GTGCGGTTCA GGTGCCGGAT ACCGGATCTC TCTCTTCATT CACCTGGATA
ACCAGGCAGA TCTGGCTTCC GGCAGGTCAA CATATGCTCA GGTTAAAATT CAGTGGTCCG
CTCTCGATCG ATACAATGAA ATTTACTCCG TGA
|
|---|
| Protein sequence | MNRGFGRWYN WILGCMIILL LLVMVMGGAS AQEVYAGVGI SGVSNNSSSA VQLPVMHQND
STLKHQIDQY ETAPTVSLDT AGVLKARLGL SRSQNLLPYL DYNAIQRDQN PTGNCWVWVG
TGLMEITHQV EDAIRDPLSI QYFDSTYHGG AGLTWAGNGG TLADFVNFYQ QQKIAVPASN
TNASFKDNTY WCNDNNQAWV KASDIATDPH YSIASIQEQK IPTRSIGTEA AIANIKTVLD
SNKGVYFAFR LPNEQAWNDF NKFWLEGNQS AVWNPDLYDG NPWESWSGGS HAVLCVGYQD
TDPANRYWIM LNSWGNAFGN RPSGLFRVKM DIDYDAMFTS SMSIPATEWE TIDMNYSPSP
QSTSIEKPYT THTVPCRVEA EDYDYGGENI SYYDTTSGNS GKVYRNDDVD IEQTTQAGGF
DVGWVRNGEW LQYTLDVPEA GDYEMRIRSS SPGAGDQIVV SVDGIDAGTL IIPQTDSFDN
YTNVSLPVKF SAGRHLVRLT FAGDRQNIDY FEINPAIPAE QGVIDGKISL GSTPSGATVF
LDNVLAGMTP LTIPSLRPGS HHLDIAKSGY QTQQLTTVIK SGETQQMNVT LLRSYPAPYV
NHTLPALIEA EDYNLGGEGI AYHDTTAWNE GSVYRNDGVD IEQIHPTGGY KVCWIRDGEW
LTYTVTIPQA GNYTVIFTGC SITPESSCTL SIDDTTLTTV SLPDTGSSDR FGTVQRMVSL
PAGVHLLKLS FIGRQDVDNL QFVAAGLQPQ VSSTTVATPA PILETPTVSP SETFIVRPTP
SVTFGQFQSL PGQIQAEDFD TGGEMVAYHD TTSENLGESY RDEGVDIIFN PVDGSNSVTD
IEPGEWIRYP VNITESGVYN ASFRVAANVS GSTVDILIDD SNLSAVQVPD TGSLSSFTWI
TRQIWLPAGQ HMLRLKFSGP LSIDTMKFTP
|
|---|
| |