| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1710 |
|---|
| Symbol | |
|---|
| ID | 7271273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 1776593 |
|---|
| End bp | 1780660 |
|---|
| Gene Length | 4068 bp |
|---|
| Protein Length | 1355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643570325 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
|---|
| Protein accession | YP_002466741 |
|---|
| Protein GI | 219852309 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCTG ATAAAGAGGA CAGTCCATCA GGGTCTCTGG CACCTGACCC GACAACGATA
GCACTCCTCA TTCAAGGACT TGATCAGCTC CCGATCCCGA TGCATGTGAT CAGCAAAGAC
CACAGGATTC TCTACACCAA TGAGGCTGCT GCATCACTGG TTGGAGAGAA ACGAGAAGAT
ATGATCGGTA AAAAATGCTA TGATATCTTC AAATCCCCAA ACTGCAAAAC CCCCAACTGC
ACGTGCGAGA TCGCGATGGA AAAGAAGATC CTCTATAGTG TCGATGTTCC CATCGGGGAC
AGGGTGATCT ACGTAACCAG TGCACCCCTG ATGGACAGTA CCGGCACCGT GATCGGTGCG
ATAGAGTACT TCCCTGATGT GACCGGACAG AAGAAGGCAA TCGCCGATAT AATCACAATC
ACAGAAGAGG CGAAGAGCGG GGATCTTTCG GCACGTACAG ATCTTACCCT CCATACCGGG
GACTTCAAGA AGATGGCCGA GGGAATCAAC AATCTCCTCG ACATCTTCGT CGAGAAGAAC
AGTTCGGTCA GGGATTTCAC CAAGGCTGAG GTTGAACGGA TGGCTGCAAA CCTCTCCCTG
CTCGCAGAGG GAGACCTCAA CTTCGACCTG ACCGTCAGGC CGGCCGACGA GTTCACTCAG
GCAGAATACG CCGATTTTTT GAAGATGAAC GAAAGTCTGC ACCAGGTGCA GCTTGCGGTC
TGTGCAGTGA TCAACGATGG TGCTCTGCTC ACTGAATCTA TAGGAAAGGG GAAACTTTCA
GTGCGTGCTG ACACCTCCCG GCACAAAGGA GACTTCAGGC AGATCATGGC AGGGTTCAAC
CAGACGCTCG ATGACCTAAT TCGCAGGCTC CGTATTGTAT CGGTTGCAGT CAGCAAGATC
GGAATGGGAG TTATTCCAGA GAAGATCACA ACCGAAACGT ATGGAGAGTT CATTGATCTT
AGGGACAACT TAAATGCCTG CATTGACGGG CTTGGCGGGC TGGTCGAGGC AAATCAAATC
CTAGAACGGA TGGCGAATAA CGACTACAGT AAAGGGATTG AAGGGAACTA CCTTGGCCTC
TTTGAAGAGG TCAAGATCCA TGTCAACACG GTCAAGGATC GGGTCAACAC ACTGGCCACC
TCGATAGAGA AGATCGGCGA TGGCGATCTC AGCGAGTGGA AGGAATATGT TGCCATAGAA
AAGAGATCAG AGCAGGACCG GTTGATCCCG GGATTCATTC GAACACTTAA ACATCTGCAT
GCTTTGACCG AAGATACGGG GAAACTCGCC AGATCAGCCA TCGAAGGAAG ACTTGAAACA
CGAGCTGATG CCTCGGCCCA TGAGGGGGAA TACCGAAAGA TCATTGAGGG GATTAACCAG
ACGCTCGATG CCGTCATTGG ACCATTGAAC ATCGCTGCTG ACTATGTCGA TCAAGTCAGC
ACAGGGATCA TGCCTGAGAA GATCACGGCA GAGTATAAAG GTGATTTCAA CGTCCTGATG
GGAAATTTCA ACCACCTGAT CGATGTAATG AGGATGCGGA ATGATGAGAT CGAAATGCTG
ATCGAGGCTG CGATCGATGG AAAACTTGAA ACTCGCGCTG ATCCGTCAAA ATTCGAGGGT
GGTAACAAGA AGATGATGGA GGGAATCAAT GCAATGCTCG ACGCAGTCAT CGGGCCCTTG
CATGTCGCTG CCGACTATGT CGACAAGATC AGTTCCGGGG AAATTCCCCA GAAGATCACC
GATCAGTATT ACGGCGACTT CAACACCATC AAAAACAATC TGAACAACTG CATCGATGCG
ATTGTCGAAC AGGCGAATAC CGCACAGAAG ATTGCAGAAG GCGACCTGTC GGTGAAGGTG
AACGTACGAT CTGATAACGA TCTTGTTGCA AAGAGCCTGG TCGATGTCAT TAATGTTCTC
GCAAATCTAC AGGAAGAACT GCTCCGGTTG ACCGAAGCTT CCAGTCAGGG GAAACTGACT
GAACGTGGAA GGGCGGATCA GTTCAATGGC GCATATGCCG ATGTGATCCA CGGCGTAAAT
CATATGCTTG ATGAGATCAT TCTTCCAATT GAGGCAGGCA ACAAGATTCT GCGCCAGATC
CGGGGTGGTG ATCTGAGCGA ACGTGTGGAG ATCGAGTGCT ATGGCGACCA TCAAAAGATG
AAAGATGCGA TCAACGGCGT CCACGCGTGG TTGAATGACC TGATCACTTT TATTACAAAA
ATTGCCAATG GCGATCTCAC CGCTGATATG GAGAAGGCAT CCGAACGTGA CCAGATCCAT
GAGTGGCTGA TACTGCTCAA GAATAACATC AATGCACTCG TTGTTGATGC AGAATTGCTC
TCAGCGGCAG CAGTCGAGGG TAAGCTTGAG ACCCGGGCGG ATACAACCAA ACTCCAGGGG
AACTACAGAA AGATCATTGA AGGGTTCAAT CAGACGCTCG ATGCCGTCAT CGGGCCTTTG
AATATTGCGA TTGAAAATGT TGAAAAGATC GCCATAGGGG TCGCACCGGA TAAGATCACG
GCAGAATATA AGGGGGATTT CAACCACCTG ATGATAAATC TGAACCACCT TGTCGATGTT
ATGACGATAC GAAACGCTGA GATCGAGATG CTGATCGAGG CTGCAATCAA TGGAAAACTC
GCAACACGCG CTGATCCGTC AAAATTCGAG GGTGGTAACC GGAAGATGAT GGAGGGTGTC
AATGCGATGC TTGAAGCCGT CATCGGGCCT CTAAATGTCG CAGCAGATTA TGTCGACAAG
ATCAGTTCCG GGGCGATCCC CCTGAAGATC ACCGACCAGT ACAACGGGGA CTTCAACACC
ATCAAAAACA ATCTGAACAC CTGCATCGAT CACATCAACG CACTCGTCGC AGATGCCAAT
ATGCTCTCGA TGGCAGCAGT CGAAGGCAGA CTCGCAACCA GGGCAGATGC AACCAAACAC
CAGGGTGACT ACAGGAAGAT CGTTGAAGGG GTCAACCAGA CACTCGACTC CGTTATCGGA
CCTGTCATTG AGGCGACGCG GGTCGCAAAA GAATTCTCCC AGTACAACTA CGCGGCCAGG
ATCGACAAGA ACCTCATATT GGCTGGAGAC TTTATCACGG TCAAGGAGGC CATGGATAAT
ATCGGAATCG CGGTCTCGGC TGCAATCGGA GATATTGGCG TGCAGGTGAC CGACCTCGCA
GCCTCGGCAG AGGAGGCGAA CGCAAGTGTA GAGGAGGTGG TCTCAGGGGC ACAGCAGGTC
GCTGAAAGCG CCGGTAAGGT CAGTTCCAAC GCTGAGAAAG GGAACCAGGG TCTCGAACAG
GTGCTCAAAG CGATGGAGGA TCTCTCCGCC GCCGTCGAAG AGGTGACTGC CAACACCGAG
GCAGTAGCCA CCCTTGCAAA TGGTGCGAAC ACTCTCTCTA AGGACGGGGC CGAACTCGCT
CGGAAGGCTG AACTGGGGAT GGTTGGAATC ACCCGATCCA CCACCGAAGT GGACCAGATC
ATCGGCGAGA TCAAGGTCGA GATGCAGAAG ATCGGGAAGA TCGTCGGCCT GATCTCGGAC
CTGGCCAGCC AGACCAACCT GCTCGCCCTG AACGCGGCAA TCGAGGCCGC ACGGGCTGGC
GATGCCGGCC GCGGGTTCGC CGTGGTCGCA GCAGAGGTGA AGTCTCTTGC CCAGGAGTCG
AGAACCTCAG CAGAATCGAT CGCCGAGATG ATCGGGGGAC TTCAGCAAAA ATCCGAACTG
GCAGCGGTAG CCACAGCCTC AGCATCAAAG GAGGTCGGCG AAGGGTCGGC AGTTCTCTCC
GAGACCCTGA ATGTCTTCAA CCGGATCGTT GGTGATATCG AGAAGATCAC CCGTTCGGTC
GAAGAGGTTG CAAGCGCCTC TGAAGAGCAG GCAGCCACCG TAGAGGAGAT CACGGCCAGT
GTCCATGAGG TGAGTTCCCT GATAGGCGAG ACAGCCAGCG ACGCAGGGGA TGCAGCCGCT
GCTAGTGAGG AGTCCTCGGC GGCGATCGAC GAGGTCGGAA AGATCATCGA GAATGTGAAT
GTAGTCGTCG ATAAAGTCTC CATGGGGATA GGAAAGTTCA GAGTCTGA
|
|---|
| Protein sequence | MSADKEDSPS GSLAPDPTTI ALLIQGLDQL PIPMHVISKD HRILYTNEAA ASLVGEKRED
MIGKKCYDIF KSPNCKTPNC TCEIAMEKKI LYSVDVPIGD RVIYVTSAPL MDSTGTVIGA
IEYFPDVTGQ KKAIADIITI TEEAKSGDLS ARTDLTLHTG DFKKMAEGIN NLLDIFVEKN
SSVRDFTKAE VERMAANLSL LAEGDLNFDL TVRPADEFTQ AEYADFLKMN ESLHQVQLAV
CAVINDGALL TESIGKGKLS VRADTSRHKG DFRQIMAGFN QTLDDLIRRL RIVSVAVSKI
GMGVIPEKIT TETYGEFIDL RDNLNACIDG LGGLVEANQI LERMANNDYS KGIEGNYLGL
FEEVKIHVNT VKDRVNTLAT SIEKIGDGDL SEWKEYVAIE KRSEQDRLIP GFIRTLKHLH
ALTEDTGKLA RSAIEGRLET RADASAHEGE YRKIIEGINQ TLDAVIGPLN IAADYVDQVS
TGIMPEKITA EYKGDFNVLM GNFNHLIDVM RMRNDEIEML IEAAIDGKLE TRADPSKFEG
GNKKMMEGIN AMLDAVIGPL HVAADYVDKI SSGEIPQKIT DQYYGDFNTI KNNLNNCIDA
IVEQANTAQK IAEGDLSVKV NVRSDNDLVA KSLVDVINVL ANLQEELLRL TEASSQGKLT
ERGRADQFNG AYADVIHGVN HMLDEIILPI EAGNKILRQI RGGDLSERVE IECYGDHQKM
KDAINGVHAW LNDLITFITK IANGDLTADM EKASERDQIH EWLILLKNNI NALVVDAELL
SAAAVEGKLE TRADTTKLQG NYRKIIEGFN QTLDAVIGPL NIAIENVEKI AIGVAPDKIT
AEYKGDFNHL MINLNHLVDV MTIRNAEIEM LIEAAINGKL ATRADPSKFE GGNRKMMEGV
NAMLEAVIGP LNVAADYVDK ISSGAIPLKI TDQYNGDFNT IKNNLNTCID HINALVADAN
MLSMAAVEGR LATRADATKH QGDYRKIVEG VNQTLDSVIG PVIEATRVAK EFSQYNYAAR
IDKNLILAGD FITVKEAMDN IGIAVSAAIG DIGVQVTDLA ASAEEANASV EEVVSGAQQV
AESAGKVSSN AEKGNQGLEQ VLKAMEDLSA AVEEVTANTE AVATLANGAN TLSKDGAELA
RKAELGMVGI TRSTTEVDQI IGEIKVEMQK IGKIVGLISD LASQTNLLAL NAAIEAARAG
DAGRGFAVVA AEVKSLAQES RTSAESIAEM IGGLQQKSEL AAVATASASK EVGEGSAVLS
ETLNVFNRIV GDIEKITRSV EEVASASEEQ AATVEEITAS VHEVSSLIGE TASDAGDAAA
ASEESSAAID EVGKIIENVN VVVDKVSMGI GKFRV
|
|---|
| |